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两种鲇形目下甲鲇科鱼类线粒体基因组与九个已知物种的比较分析及甲鲇科系统发育分析

Comparative analysis of the mitogenomes of two (Siluriformes, Loricarioidei) with nine known , and a phylogenetic analysis of Loricarioidei.

作者信息

Sun Cheng-He, Huang Qi, Zeng Xiao-Shu, Li Sha, Zhang Xiao-Li, Zhang Ya-Nan, Liao Jian, Lu Chang-Hu, Han Bo-Ping, Zhang Qun

机构信息

Department of Ecology and Institute of Hydrobiology, Jinan University, Guangzhou 510632, China Jinan University Guangzhou China.

College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China Nanjing Forestry University Nanjing China.

出版信息

Zookeys. 2022 Jan 24;1083:89-107. doi: 10.3897/zookeys.1083.76887. eCollection 2022.

DOI:10.3897/zookeys.1083.76887
PMID:35115873
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8803743/
Abstract

is a speciose catfish genus from South America with widely investigated phylogenetic and evolutionary relationships. The complete mitogenomes of and were sequenced, assembled, and annotated using next-generation sequencing. The genome arrangements, gene contents, genome structures, base compositions, evolutionary features, codon usage, and tRNA structures of the two mitogenomes were compared and analyzed with nine published mitogenomes of . Phylogenetic analysis was performed using concatenated nucleotide sequences with 13 protein-coding genes and two rRNAs with 44 mitogenomes of Siluriformes. These results provide information on the mitogenomes of eleven species and evolutionary relationships within the suborder Loricarioidei, which may be applicable for further phylogenetic and taxonomic studies on Siluriformes and Loricarioidei.

摘要

是一个来自南美洲的种类丰富的鲶鱼属,其系统发育和进化关系得到了广泛研究。使用下一代测序技术对[具体物种1]和[具体物种2]的完整线粒体基因组进行了测序、组装和注释。将这两个线粒体基因组的基因组排列、基因内容、基因组结构、碱基组成、进化特征、密码子使用情况和tRNA结构与已发表的九个[相关鲶鱼属]线粒体基因组进行了比较和分析。使用13个蛋白质编码基因和两个rRNA的串联核苷酸序列以及44个鲇形目线粒体基因组进行了系统发育分析。这些结果提供了关于11个[相关鲶鱼属]物种线粒体基因组以及铠甲鲇亚目内进化关系的信息,这可能适用于鲇形目和铠甲鲇亚目的进一步系统发育和分类学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/a1881afad45a/zookeys-1083-089-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/9cbb73202d88/zookeys-1083-089-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/efa3bd8e9673/zookeys-1083-089-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/a652cf37d5ce/zookeys-1083-089-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/a1881afad45a/zookeys-1083-089-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/9cbb73202d88/zookeys-1083-089-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/efa3bd8e9673/zookeys-1083-089-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/a652cf37d5ce/zookeys-1083-089-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f31/8803743/a1881afad45a/zookeys-1083-089-g004.jpg

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