Ivanova Anastasia A, Kulichevskaya Irina S, Merkel Alexander Y, Toshchakov Stepan V, Dedysh Svetlana N
Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences Moscow, Russia.
Immanuel Kant Baltic Federal University Kaliningrad, Russia.
Front Microbiol. 2016 Dec 22;7:2065. doi: 10.3389/fmicb.2016.02065. eCollection 2016.
A wide variety of terrestrial ecosystems in tundra have a ground vegetation cover composed of reindeer lichens (genera and ). The microbial communities of two lichen-dominated ecosystems typical of the sub-arctic zone of northwestern Siberia, that is a forested tundra soil and a shallow acidic peatland, were examined in our study. As revealed by molecular analyses, soil and peat layers just beneath the lichen cover were abundantly colonized by bacteria from the phylum . Highest abundance of planctomycetes detected by fluorescence hybridization was in the range 2.2-2.7 × 10 cells per gram of wet weight. 16S rRNA gene fragments from the comprised 8-13% of total 16S rRNA gene reads retrieved using Illumina pair-end sequencing from the soil and peat samples. Lichen-associated assemblages of planctomycetes displayed unexpectedly high diversity, with a total of 89,662 reads representing 1723 operational taxonomic units determined at 97% sequence identity. The soil of forested tundra was dominated by uncultivated members of the family Planctomycetaceae (53-71% of total -like reads), while sequences affiliated with the -related group WD2101 (recently assigned to the order Tepidisphaerales) were most abundant in peat (28-51% of total reads). Representatives of the - group (14-28% of total reads) and the lineages defined by the genera (1-4%) and (1-3%) were present in both habitats. Two strains of -like bacteria were isolated from studied soil and peat samples. These planctomycetes displayed good tolerance of low temperatures (4-15°C) and were capable of growth on a number of polysaccharides, including lichenan, a characteristic component of lichen-derived phytomass.
苔原地区有各种各样的陆地生态系统,其地面植被覆盖物由驯鹿地衣(属和属)组成。在我们的研究中,对西伯利亚西北部亚北极地区典型的两个以地衣为主的生态系统的微生物群落进行了研究,即森林苔原土壤和浅层酸性泥炭地。分子分析表明,地衣覆盖层下方的土壤和泥炭层中大量定殖着来自门的细菌。通过荧光原位杂交检测到的浮霉菌门细菌的最高丰度在每克湿重2.2 - 2.7×10个细胞的范围内。使用Illumina双端测序从土壤和泥炭样品中检索到的16S rRNA基因片段中,来自浮霉菌门的片段占总16S rRNA基因读数的8 - 13%。与地衣相关的浮霉菌门菌群显示出意想不到的高多样性,共有89,662条读数,代表了在97%序列同一性水平上确定的1723个操作分类单元。森林苔原的土壤中以浮霉菌科未培养成员为主(占总类浮霉菌读数的53 - 71%),而与相关类群WD2101(最近归入暖球形菌目)相关的序列在泥炭中最为丰富(占总读数的28 - 51%)。类群的代表(占总读数的14 - 28%)以及由属(1 - 4%)和属(1 - 3%)定义的谱系在两个生境中均有出现。从研究的土壤和泥炭样品中分离出了两株类浮霉菌细菌。这些浮霉菌对低温(4 - 15°C)具有良好的耐受性,并且能够在多种多糖上生长,包括地衣聚糖,这是地衣衍生植物物质的一种特征成分。