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关于去铁铁载体与金属离子(镁、铝、钙、锰、铁、钴、镍、铜、锌)之间络合物形成的密度泛函理论研究

A DFT study on the complex formation between desferrithiocin and metal ions (Mg, Al, Ca, Mn, Fe, Co, Ni, Cu, Zn).

作者信息

Kaviani Sadegh, Izadyar Mohammad, Housaindokht Mohammad Reza

机构信息

Department of Chemistry, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran.

Department of Chemistry, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran.

出版信息

Comput Biol Chem. 2017 Apr;67:114-121. doi: 10.1016/j.compbiolchem.2016.12.012. Epub 2017 Jan 3.

Abstract

In recent years, Metal-chelating compounds, namely siderphores have been considered very much because of their crucial role in various fields of the environmental researches. Their importance lies in the fact that they are able to be bonded to a variety of metals in addition to iron. A theoretical study on the structures of desferrithiocin siderphore coordinated to Mg, Al, Ca, Mn, Fe, Co, Ni, Cu and Zn metal ions was carried out, using the CAM-B3LYP/6-31G(d) level of the theory in the water. In order to understand the factors which control the stability, reactivity and the strength of toxic metals excretion as well as microbial uptake of the metal-siderphore complexes, we examined the stability and binding energies of the desferrithiocin and various metal ions with different spin states. The binding affinity of desferrithiocin to Fe (log β=23.88) showed that the desferrithiocin can scavenge the excess iron(III) from the labile sources. Also, the binding energy values were well described by addition of the dispersion-corrected D3 functional. Because of the importance of the charge transfer in the complex formation, donor-acceptor interaction energies were evaluated. Based on this analysis, an increase in the effective nuclear charge increases E(2) values. Vibrational analysis showed that the critical bonds (CO stretching and CH bending) are in the range of 1300-1800cm. Finally, some probable correlations between the complexation behavior and quantum chemistry descriptors have been analyzed.

摘要

近年来,金属螯合化合物,即铁载体,因其在环境研究各个领域的关键作用而备受关注。它们的重要性在于,除了铁之外,它们还能够与多种金属结合。利用水中的CAM-B3LYP/6-31G(d)理论水平,对与镁、铝、钙、锰、铁、钴、镍、铜和锌金属离子配位的去铁铁载体的结构进行了理论研究。为了了解控制金属-铁载体配合物稳定性、反应性、有毒金属排泄强度以及微生物摄取的因素,我们研究了去铁铁载体与不同自旋态的各种金属离子的稳定性和结合能。去铁铁载体与铁的结合亲和力(logβ=23.88)表明,去铁铁载体可以从不稳定来源清除过量的铁(III)。此外,通过添加色散校正的D3泛函可以很好地描述结合能值。由于电荷转移在配合物形成中的重要性,评估了供体-受体相互作用能。基于此分析,有效核电荷的增加会增加E(2)值。振动分析表明,关键键(CO伸缩和CH弯曲)在1300-1800cm范围内。最后,分析了配合行为与量子化学描述符之间的一些可能相关性。

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