Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran.
Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran.
Comput Biol Chem. 2020 Jun;86:107267. doi: 10.1016/j.compbiolchem.2020.107267. Epub 2020 Apr 21.
In this work, systematic density functional theory (DFT) calculations were performed to study the interactions of various metal ions (Al, Fe, Co, Ni, Cu, and Zn) and the clinically useful chelating agent called deferiprone (DFP) at the M05-2X/6-31G(d) level of theory. The thermodynamic parameters of metal-deferiprone complexes were determined in water. Based on the obtained data, the theoretical binding energy trend is as follows: Al > Fe > Cu > Ni > Co > Zn, confirming that [Al(DFP)] has the most interaction energy. Moreover, Natural bond orbital analysis was employed to determine and analyze the natural charges on different atoms and charge transfer between the metal ions and ligands (oxygen atoms) as well as the interaction energy (E(2)) values. The calculated value of ƩE(2) (donor-acceptor interaction energy) for [Al(DFP)] complex is higher than other complexes, which is according to energy analysis. To confirm the type of effective interactions and bonding properties in the water, the quantum theory of atoms in molecules (QTAIM) analysis was applied. QTAIM analysis confirmed that the strongest M - O bond is found in the [Al(DFP)] complex. The calculated topological properties at the bond critical points, such as the ratio of the kinetic energy density to the potential energy density, -G(r)/V(r), electronic energy density, H(r), confirm that M - O bonds in the Al-deferiprone complex are non-covalent, while in other complexes, they are electrostatic and partially covalent.
在这项工作中,我们进行了系统的密度泛函理论(DFT)计算,以研究各种金属离子(Al、Fe、Co、Ni、Cu 和 Zn)与临床上有用的螯合剂 deferiprone(DFP)之间的相互作用。在 M05-2X/6-31G(d)理论水平下,确定了金属-去铁酮配合物在水中的热力学参数。根据获得的数据,理论结合能趋势如下:Al > Fe > Cu > Ni > Co > Zn,证实[Al(DFP)]具有最强的相互作用能。此外,还采用自然键轨道分析(NBO)来确定和分析不同原子上的自然电荷、金属离子和配体(氧原子)之间的电荷转移以及相互作用能(E(2))值。[Al(DFP)]配合物的计算值ƩE(2)(供体-受体相互作用能)高于其他配合物,这符合能量分析。为了确认水分子中有效相互作用的类型和键合性质,我们应用了原子分子量子理论(QTAIM)分析。QTAIM 分析证实,[Al(DFP)]配合物中存在最强的 M-O 键。在键临界点处的拓扑性质,如动能密度与势能密度的比值-G(r)/V(r)、电子能量密度 H(r)等,计算结果表明,Al-去铁酮配合物中的 M-O 键是非共价的,而在其他配合物中,它们是静电的和部分共价的。