Bondoso Joana, Godoy-Vitorino Filipa, Balagué Vanessa, Gasol Josep M, Harder Jens, Lage Olga Maria
Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n° 4169-007 Porto, Portugal.
CIMAR/CIIMAR - Centro Interdisciplinar de Investigação Marinha e Ambiental - Universidade do Porto, Rua dos Bragas, 289, 4050-123 Porto, Portugal.
FEMS Microbiol Ecol. 2017 Mar 1;93(3). doi: 10.1093/femsec/fiw255.
Planctomycetes, a unique group of widespread and understudied bacteria, are known to be associated with macroalgae. The temporal dynamics and the host-specific association of planctomycetal communities on Fucus spiralis, Ulva sp. and Chondrus crispus from two locations in the North Coast of Portugal were assessed both by denaturing gradient gel electrophoresis with group-specific primers and 16S rDNA amplicon libraries. The epiphytic planctomycetal communities showed a significant association with the host macroalgal species independently of the geographical location and the season. This pattern was confirmed by clone libraries of winter and summer samples: we obtained 720 16S rRNA gene sequences that represented 44 operational taxonomic units (OTUs) within the phylum Planctomycetes. Most of the OTUs belonged to Blastopirellula, followed by Rhodopirellula, Planctomyces, the Pir4 lineage and the uncultured class OM190 (this last one nearly 30% of the OTUs). Ulva sp. and C. crispus had more diverse planctomycetal communities than F. spiralis. Analysis of beta diversity showed that the planctomycetal microbiome was host specific. We hypothesize that the specific association of Planctomycetes and their macroalgal hosts is likely determined by nutritional molecules provided by the algae and the set of sulfatases inherent to each Planctomycetes species.
浮霉菌门细菌是一类独特的细菌群体,广泛分布但研究不足,已知它们与大型藻类有关。通过使用组特异性引物的变性梯度凝胶电泳和16S rDNA扩增子文库,评估了来自葡萄牙北海岸两个地点的螺旋藻、石莼属和皱波角叉菜上的浮霉菌门群落的时间动态和宿主特异性关联。附生的浮霉菌门群落与宿主大型藻类物种表现出显著关联,与地理位置和季节无关。冬季和夏季样本的克隆文库证实了这种模式:我们获得了720个16S rRNA基因序列,这些序列代表了浮霉菌门内的44个操作分类单元(OTU)。大多数OTU属于 Blastopirellula,其次是 Rhodopirellula、Planctomyces、Pir4 谱系和未培养的 OM190 类(最后一类占OTU的近30%)。石莼属和皱波角叉菜的浮霉菌门群落比螺旋藻的更多样化。β多样性分析表明,浮霉菌门微生物群具有宿主特异性。我们推测,浮霉菌门与其大型藻类宿主的特异性关联可能由藻类提供的营养分子和每个浮霉菌门物种固有的硫酸酯酶所决定。