Sikes Derek S, Bowser Matthew, Morton John M, Bickford Casey, Meierotto Sarah, Hildebrandt Kyndall
a University of Alaska Museum, Fairbanks, AK 99775-6960, USA.
b U.S. Fish and Wildlife Service, Kenai National Wildlife Refuge, P.O. Box 2139, Soldotna, AK 99669, USA.
Genome. 2017 Mar;60(3):248-259. doi: 10.1139/gen-2015-0203. Epub 2016 Oct 21.
Climate change may result in ecological futures with novel species assemblages, trophic mismatch, and mass extinction. Alaska has a limited taxonomic workforce to address these changes. We are building a DNA barcode library to facilitate a metabarcoding approach to monitoring non-marine arthropods. Working with the Canadian Centre for DNA Barcoding, we obtained DNA barcodes from recently collected and authoritatively identified specimens in the University of Alaska Museum (UAM) Insect Collection and the Kenai National Wildlife Refuge collection. We submitted tissues from 4776 specimens, of which 81% yielded DNA barcodes representing 1662 species and 1788 Barcode Index Numbers (BINs), of primarily terrestrial, large-bodied arthropods. This represents 84% of the species available for DNA barcoding in the UAM Insect Collection. There are now 4020 Alaskan arthropod species represented by DNA barcodes, after including all records in Barcode of Life Data Systems (BOLD) of species that occur in Alaska - i.e., 48.5% of the 8277 Alaskan, non-marine-arthropod, named species have associated DNA barcodes. An assessment of the identification power of the library in its current state yielded fewer species-level identifications than expected, but the results were not discouraging. We believe we are the first to deliberately begin development of a DNA barcode library of the entire arthropod fauna for a North American state or province. Although far from complete, this library will become increasingly valuable as more species are added and costs to obtain DNA sequences fall.
气候变化可能导致生态系统出现新的物种组合、营养失衡和大规模灭绝。阿拉斯加分类学领域的专业人员有限,难以应对这些变化。我们正在构建一个DNA条形码库,以促进采用宏条形码方法监测非海洋节肢动物。我们与加拿大DNA条形码中心合作,从阿拉斯加大学博物馆(UAM)昆虫收藏馆和基奈国家野生动物保护区收藏的近期采集且经过权威鉴定的标本中获取了DNA条形码。我们提交了4776个标本的组织,其中81%产生了代表1662个物种和1788个条形码索引号(BINs)的DNA条形码,这些标本主要是陆生大型节肢动物。这占UAM昆虫收藏馆中可用于DNA条形码分析物种的84%。在纳入生命条形码数据系统(BOLD)中所有阿拉斯加物种的记录后,现在有4020种阿拉斯加节肢动物有DNA条形码代表——即8277种阿拉斯加非海洋节肢动物命名物种中的48.5%有相关的DNA条形码。对当前状态下该库的鉴定能力评估显示,物种水平的鉴定结果比预期少,但结果并不令人气馁。我们相信我们是首个有意开始为北美一个州或省份开发整个节肢动物区系DNA条形码库的团队。尽管远未完成,但随着更多物种被添加以及获取DNA序列的成本下降,这个库将变得越来越有价值。