Raupach Michael J, Barco Andrea, Steinke Dirk, Beermann Jan, Laakmann Silke, Mohrbeck Inga, Neumann Hermann, Kihara Terue C, Pointner Karin, Radulovici Adriana, Segelken-Voigt Alexandra, Wesse Christina, Knebelsberger Thomas
German Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Biodiversity Institute of Ontario, University of Guelph, Guelph, Ontario, Canada.
PLoS One. 2015 Sep 29;10(9):e0139421. doi: 10.1371/journal.pone.0139421. eCollection 2015.
During the last years DNA barcoding has become a popular method of choice for molecular specimen identification. Here we present a comprehensive DNA barcode library of various crustacean taxa found in the North Sea, one of the most extensively studied marine regions of the world. Our data set includes 1,332 barcodes covering 205 species, including taxa of the Amphipoda, Copepoda, Decapoda, Isopoda, Thecostraca, and others. This dataset represents the most extensive DNA barcode library of the Crustacea in terms of species number to date. By using the Barcode of Life Data Systems (BOLD), unique BINs were identified for 198 (96.6%) of the analyzed species. Six species were characterized by two BINs (2.9%), and three BINs were found for the amphipod species Gammarus salinus Spooner, 1947 (0.4%). Intraspecific distances with values higher than 2.2% were revealed for 13 species (6.3%). Exceptionally high distances of up to 14.87% between two distinct but monophyletic clusters were found for the parasitic copepod Caligus elongatus Nordmann, 1832, supporting the results of previous studies that indicated the existence of an overlooked sea louse species. In contrast to these high distances, haplotype-sharing was observed for two decapod spider crab species, Macropodia parva Van Noort & Adema, 1985 and Macropodia rostrata (Linnaeus, 1761), underlining the need for a taxonomic revision of both species. Summarizing the results, our study confirms the application of DNA barcodes as highly effective identification system for the analyzed marine crustaceans of the North Sea and represents an important milestone for modern biodiversity assessment studies using barcode sequences.
在过去几年中,DNA条形码已成为分子标本鉴定的一种常用方法。在此,我们展示了一个全面的DNA条形码库,该库涵盖了在北海发现的各种甲壳类分类群,北海是世界上研究最为广泛的海洋区域之一。我们的数据集包含1332个条形码,覆盖205个物种,包括端足目、桡足亚纲、十足目、等足目、鞘甲亚纲等分类群。就物种数量而言,该数据集代表了迄今为止最广泛的甲壳纲DNA条形码库。通过使用生命条形码数据系统(BOLD),在198个(96.6%)分析物种中鉴定出了独特的BINs。6个物种由两个BINs表征(2.9%),并且在1947年发现的端足目物种盐沼钩虾(Gammarus salinus Spooner)中发现了三个BINs(0.4%)。13个物种(6.3%)的种内距离值高于2.2%。在1832年发现的寄生桡足类长刺哲水蚤(Caligus elongatus Nordmann)中,两个不同但单系的类群之间发现了高达14.87%的异常高距离,这支持了先前研究的结果,即表明存在一种被忽视的海虱物种。与这些高距离形成对比的是,在两种十足目蜘蛛蟹物种,1985年发现的小长眼蟹(Macropodia parva Van Noort & Adema)和1761年发现的长眼蟹(Macropodia rostrata (Linnaeus))中观察到了单倍型共享,这突出了对这两个物种进行分类修订的必要性。总结结果,我们的研究证实了DNA条形码作为北海分析海洋甲壳类动物的高效鉴定系统的应用,并且代表了使用条形码序列进行现代生物多样性评估研究的一个重要里程碑。