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细菌和真核生物中的核糖体暂停、停滞与拯救

Ribosome pausing, arrest and rescue in bacteria and eukaryotes.

作者信息

Buskirk Allen R, Green Rachel

机构信息

Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Howard Hughes Medical Institute, Baltimore, MD, USA.

Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Howard Hughes Medical Institute, Baltimore, MD, USA

出版信息

Philos Trans R Soc Lond B Biol Sci. 2017 Mar 19;372(1716). doi: 10.1098/rstb.2016.0183.

DOI:10.1098/rstb.2016.0183
PMID:28138069
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5311927/
Abstract

Ribosomes translate genetic information into polypeptides in several basic steps: initiation, elongation, termination and recycling. When ribosomes are arrested during elongation or termination, the cell's capacity for protein synthesis is reduced. There are numerous quality control systems in place to distinguish between paused ribosomes that need some extra input to proceed and terminally stalled ribosomes that need to be rescued. Here, we discuss similarities and differences in the systems for resolution of pauses and rescue of arrested ribosomes in bacteria and eukaryotes, and how ribosome profiling has transformed our ability to decipher these molecular events.This article is part of the themed issue 'Perspectives on the ribosome'.

摘要

核糖体通过几个基本步骤将遗传信息转化为多肽

起始、延伸、终止和循环利用。当核糖体在延伸或终止过程中停滞时,细胞的蛋白质合成能力就会降低。目前有许多质量控制系统来区分需要一些额外输入才能继续的暂停核糖体和需要被拯救的最终停滞核糖体。在这里,我们讨论了细菌和真核生物中解决暂停和拯救停滞核糖体的系统的异同,以及核糖体分析如何改变了我们解读这些分子事件的能力。本文是主题为“核糖体的视角”特刊的一部分。

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本文引用的文献

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Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation.改进的核糖体足迹和 mRNA 测量为研究酵母翻译的动态和调控提供了新的见解。
Cell Rep. 2016 Feb 23;14(7):1787-1799. doi: 10.1016/j.celrep.2016.01.043. Epub 2016 Feb 11.
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Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.通过核糖体谱分析阐明细菌中的翻译暂停情况
Cell Rep. 2016 Feb 2;14(4):686-694. doi: 10.1016/j.celrep.2015.12.073. Epub 2016 Jan 14.
3
Structure of the hypusinylated eukaryotic translation factor eIF-5A bound to the ribosome.与核糖体结合的Hypusin化真核翻译起始因子eIF-5A的结构。
Nucleic Acids Res. 2016 Feb 29;44(4):1944-51. doi: 10.1093/nar/gkv1517. Epub 2015 Dec 28.
4
Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast.了解核糖体谱分析实验中的偏差揭示了酵母中翻译动力学的特征。
PLoS Genet. 2015 Dec 11;11(12):e1005732. doi: 10.1371/journal.pgen.1005732. eCollection 2015 Dec.
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Entropic Contribution of Elongation Factor P to Proline Positioning at the Catalytic Center of the Ribosome.延伸因子 P 对核糖体催化中心脯氨酸定位的熵贡献。
J Am Chem Soc. 2015 Oct 14;137(40):12997-3006. doi: 10.1021/jacs.5b07427. Epub 2015 Oct 5.
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