Sansevere Emily A, Luo Xiao, Park Joo Youn, Yoon Sunghyun, Seo Keun Seok, Robinson D Ashley
Department of Microbiology and Immunology, University of Mississippi Medical Center, Jackson, Mississippi, USA.
Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA.
J Bacteriol. 2017 Mar 28;199(8). doi: 10.1128/JB.00629-16. Print 2017 Apr 15.
ICE represents one of two families of integrative conjugative elements (ICEs) identified in the pan-genome of the human and animal pathogen Here we investigated the excision and conjugation functions of ICE and further characterized the diversity of this element. ICE excision was not significantly affected by growth, temperature, pH, or UV exposure and did not depend on The IS-like DDE transposase (Tpase; encoded by and ) of ICE must be uninterrupted for excision to occur, whereas disrupting three of the other open reading frames (ORFs) on the element significantly affects the level of excision. We demonstrate that ICE conjugatively transfers to different backgrounds at frequencies approaching that of the conjugative plasmid pGO1. We found that excision is required for conjugation, that not all backgrounds are successful recipients, and that transconjugants acquire the ability to transfer ICE Sequencing of chromosomal integration sites in serially passaged transconjugants revealed a significant integration site preference for a 15-bp AT-rich palindromic consensus sequence, which surrounds the 3-bp target site that is duplicated upon integration. A sequence analysis of ICE from different host strains of and from eight other species of staphylococci identified seven divergent subfamilies of ICE that include sequences previously classified as a transposon, a plasmid, and various ICEs. In summary, these results indicate that the IS-like Tpase functions as the ICE recombinase and that ICE represents a diverse family of mobile genetic elements that mediate conjugation in staphylococci. Integrative conjugative elements (ICEs) encode the abilities to integrate into and excise from bacterial chromosomes and plasmids and mediate conjugation between bacteria. As agents of horizontal gene transfer, ICEs may affect bacterial evolution. ICE represents one of two known families of ICEs in the pathogen , but its core functions of excision and conjugation are not well studied. Here, we show that ICE depends on its IS-like DDE transposase for excision, which is unique among ICEs, and we demonstrate the conjugative transfer and integration site preference of ICE A sequence analysis revealed that ICE has diverged into seven subfamilies that are dispersed among staphylococci.
ICE是在人类和动物病原体泛基因组中鉴定出的两类整合性接合元件(ICE)之一。在此,我们研究了ICE的切除和接合功能,并进一步表征了该元件的多样性。ICE切除不受生长、温度、pH或紫外线照射的显著影响,且不依赖于……ICE的类IS DDE转座酶(Tpase;由……和……编码)必须完整无中断才能发生切除,而破坏该元件上的其他三个开放阅读框(ORF)会显著影响切除水平。我们证明ICE以接近接合性质粒pGO1的频率接合转移到不同的……背景中。我们发现接合需要切除,并非所有……背景都是成功的受体,并且接合子获得了转移ICE的能力。对连续传代的接合子中染色体整合位点的测序揭示了对一个15bp富含AT的回文共有序列有显著的整合位点偏好,该序列围绕着整合时会重复的3bp靶位点。对来自不同宿主菌株的……以及其他八种葡萄球菌的ICE进行序列分析,鉴定出ICE的七个不同亚家族,其中包括先前被归类为转座子、质粒和各种ICE的序列。总之,这些结果表明类IS Tpase作为ICE重组酶发挥作用,并且ICE代表了一类多样的可移动遗传元件家族,它们介导葡萄球菌中的接合。整合性接合元件(ICE)编码整合到细菌染色体和质粒中以及从其中切除的能力,并介导细菌之间的接合。作为水平基因转移的媒介,ICE可能影响细菌进化。ICE是病原体中已知的两类ICE之一,但其切除和接合的核心功能尚未得到充分研究。在此,我们表明ICE的切除依赖于其类IS DDE转座酶——这在ICE中是独特的——并且我们证明了ICE的接合转移和整合位点偏好。序列分析表明ICE已分化为七个亚家族,它们分散在葡萄球菌中。