Suppr超能文献

嗜温和嗜热亲本 GH5 内切葡聚糖酶嵌合体的活性和热稳定性。

Activity and Thermostability of GH5 Endoglucanase Chimeras from Mesophilic and Thermophilic Parents.

机构信息

Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China.

College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, People's Republic of China.

出版信息

Appl Environ Microbiol. 2019 Feb 20;85(5). doi: 10.1128/AEM.02079-18. Print 2019 Mar 1.

Abstract

Cellulases from glycoside hydrolase family 5 (GH5) are key endoglucanase enzymes in the degradation of diverse polysaccharide substrates and are used in industrial enzyme cocktails to break down biomass. The GH5 family shares a canonical (βα)-barrel structure, where each (βα) module is essential for the enzyme's stability and activity. Despite their shared topology, the thermostability of GH5 endoglucanase enzymes can vary significantly, and highly thermostable variants are often sought for industrial applications. Based on the previously characterized thermophilic GH5 endoglucanase Egl5A from (Egl5A), which has an optimal temperature of 90°C, we created 10 hybrid enzymes with elements of the mesophilic endoglucanase Cel5 from (Cel5) to determine which elements are responsible for enhanced thermostability. Five of the expressed hybrid enzymes exhibit enzyme activity. Two of these hybrids exhibited pronounced increases in the temperature optimum (10 and 20°C), the temperature at which the protein lost 50% of its activity () (15 and 19°C), and the melting temperature ( ) (16.5 and 22.9°C) and extended half-lives () (∼240- and 650-fold at 55°C) relative to the values for the mesophilic parent enzyme and demonstrated improved catalytic efficiency on selected substrates. The successful hybridization strategies were validated experimentally in another GH5 endoglucanase, Cel5 from (Cel5), which demonstrated a similar increase in thermostability. Based on molecular dynamics (MD) simulations of both the Cel5 and Egl5A parent enzymes and their hybrids, we hypothesize that improved hydrophobic packing of the interface between α and α is the primary mechanism by which the hybrid enzymes increase their thermostability relative to that of the mesophilic parent Cel5. Thermal stability is an essential property of enzymes in many industrial biotechnological applications, as high temperatures improve bioreactor throughput. Many protein engineering approaches, such as rational design and directed evolution, have been employed to improve the thermal properties of mesophilic enzymes. Structure-based recombination has also been used to fuse TIM barrel fragments, and even fragments from unrelated folds, to generate new structures. However, little research has been done on GH5 endoglucanases. In this study, two GH5 endoglucanases exhibiting TIM barrel structure, Cel5 and Egl5A, with different thermal properties, were hybridized to study the roles of different (βα) motifs. This work illustrates the role that structure-guided recombination can play in helping to identify sequence function relationships within GH5 enzymes by supplementing natural diversity with synthetic diversity.

摘要

纤维素酶家族 5(GH5)中的酶是降解各种多糖底物的关键内切葡聚糖酶,并且被用于工业酶制剂中以分解生物质。GH5 家族具有典型的(βα)桶状结构,其中每个(βα)模块对于酶的稳定性和活性都是必不可少的。尽管它们具有相似的拓扑结构,但 GH5 内切葡聚糖酶的热稳定性差异很大,因此通常会寻找具有高热稳定性的变体用于工业应用。

基于先前表征的嗜热 GH5 内切葡聚糖酶 Egl5A(Egl5A),其最适温度为 90°C,我们创建了 10 种带有嗜温内切葡聚糖酶 Cel5 元素的杂交酶(Cel5),以确定哪些元素负责增强热稳定性。表达的 10 种杂交酶中有 5 种具有酶活性。其中两种杂交酶的最适温度(提高了 10°C 和 20°C)、蛋白质失去 50%活性的温度(提高了 15°C 和 19°C)以及熔点(提高了 16.5°C 和 22.9°C)和半衰期(提高了约 240-和 650 倍)与亲嗜温酶的相应值相比均有显著提高,并且对选定的底物表现出提高的催化效率。

在另一种 GH5 内切葡聚糖酶 Cel5 中,成功验证了实验验证了杂交酶的成功,Cel5 也表现出了相似的热稳定性提高。基于 Cel5 和 Egl5A 亲本酶及其杂交酶的分子动力学(MD)模拟,我们假设界面α和α之间改善的疏水性包装是杂交酶相对于亲嗜温酶 Cel5 提高其热稳定性的主要机制。

在许多工业生物技术应用中,热稳定性是酶的重要特性,因为高温可以提高生物反应器的产量。已经采用了许多蛋白质工程方法,例如合理设计和定向进化,来改善亲嗜温酶的热性质。结构重组也被用于融合 TIM 桶片段,甚至是来自不同折叠的片段,以产生新的结构。然而,关于 GH5 内切葡聚糖酶的研究很少。在这项研究中,我们杂交了具有不同热性质的两种具有 TIM 桶结构的 GH5 内切葡聚糖酶 Cel5 和 Egl5A,以研究不同(βα)基序的作用。这项工作说明了结构导向重组在帮助确定 GH5 酶中的序列功能关系方面可以发挥的作用,方法是用合成多样性补充天然多样性。

相似文献

1
Activity and Thermostability of GH5 Endoglucanase Chimeras from Mesophilic and Thermophilic Parents.
Appl Environ Microbiol. 2019 Feb 20;85(5). doi: 10.1128/AEM.02079-18. Print 2019 Mar 1.
2
Functional and structural analysis of Pichia pastoris-expressed Aspergillus niger 1,4-β-endoglucanase.
Biochem Biophys Res Commun. 2016 Jun 17;475(1):8-12. doi: 10.1016/j.bbrc.2016.05.012. Epub 2016 May 3.
3
Characterization of modular bifunctional processive endoglucanase Cel5 from Hahella chejuensis KCTC 2396.
Appl Microbiol Biotechnol. 2014 May;98(10):4421-35. doi: 10.1007/s00253-013-5446-0. Epub 2013 Dec 17.
5
Insight into the Thermophilic Mechanism of a Glycoside Hydrolase Family 5 β-Mannanase.
J Agric Food Chem. 2019 Jan 9;67(1):473-483. doi: 10.1021/acs.jafc.8b04860. Epub 2018 Dec 26.
8
Characterization and crystal structure of a thermostable glycoside hydrolase family 45 1,4-β-endoglucanase from Thielavia terrestris.
Enzyme Microb Technol. 2017 Apr;99:32-37. doi: 10.1016/j.enzmictec.2017.01.005. Epub 2017 Jan 17.
10
Purification and characterization of novel, thermostable and non-processive GH5 family endoglucanase from Fomitopsis meliae CFA 2.
Int J Biol Macromol. 2021 Jul 1;182:1161-1169. doi: 10.1016/j.ijbiomac.2021.04.110. Epub 2021 Apr 20.

引用本文的文献

2
A comprehensive review on microbial hyaluronan-degrading enzymes: from virulence factors to biotechnological tools.
Bioresour Bioprocess. 2024 Dec 25;11(1):114. doi: 10.1186/s40643-024-00832-x.
3
Biofuel production from lignocellulose via thermophile-based consolidated bioprocessing.
Eng Microbiol. 2024 Sep 10;4(4):100174. doi: 10.1016/j.engmic.2024.100174. eCollection 2024 Dec.
4
Increasing thermostability of the key photorespiratory enzyme glycerate 3-kinase by structure-based recombination.
Plant Biotechnol J. 2025 Feb;23(2):454-466. doi: 10.1111/pbi.14508. Epub 2024 Nov 17.
5
Analyzing Current Trends and Possible Strategies to Improve Sucrose Isomerases' Thermostability.
Int J Mol Sci. 2023 Sep 25;24(19):14513. doi: 10.3390/ijms241914513.
6
Thermostability improvement of sucrose isomerase PalI NX-5: a comprehensive strategy.
Biotechnol Lett. 2023 Jul;45(7):885-904. doi: 10.1007/s10529-023-03388-6. Epub 2023 May 18.
7
Plant Terpenoid Permeability through Biological Membranes Explored via Molecular Simulations.
J Phys Chem B. 2023 Feb 9;127(5):1144-1157. doi: 10.1021/acs.jpcb.2c07209. Epub 2023 Jan 30.
9
Engineering Robust Cellulases for Tailored Lignocellulosic Degradation Cocktails.
Int J Mol Sci. 2020 Feb 26;21(5):1589. doi: 10.3390/ijms21051589.

本文引用的文献

1
Improving the thermal stability of cellobiohydrolase Cel7A from by directed evolution.
J Biol Chem. 2017 Oct 20;292(42):17418-17430. doi: 10.1074/jbc.M117.803270. Epub 2017 Aug 31.
2
Differential Membrane Binding Mechanics of Synaptotagmin Isoforms Observed in Atomic Detail.
Biochemistry. 2017 Jan 10;56(1):281-293. doi: 10.1021/acs.biochem.6b00468. Epub 2016 Dec 20.
3
CHARMM36m: an improved force field for folded and intrinsically disordered proteins.
Nat Methods. 2017 Jan;14(1):71-73. doi: 10.1038/nmeth.4067. Epub 2016 Nov 7.
5
Improvement of the catalytic performance of a Bispora antennata cellulase by replacing the N-terminal semi-barrel structure.
Bioresour Technol. 2016 Oct;218:279-85. doi: 10.1016/j.biortech.2016.06.094. Epub 2016 Jun 25.
6
Functional and structural analysis of Pichia pastoris-expressed Aspergillus niger 1,4-β-endoglucanase.
Biochem Biophys Res Commun. 2016 Jun 17;475(1):8-12. doi: 10.1016/j.bbrc.2016.05.012. Epub 2016 May 3.
7
Functional and structural analyses of a 1,4-β-endoglucanase from Ganoderma lucidum.
Enzyme Microb Technol. 2016 May;86:67-74. doi: 10.1016/j.enzmictec.2016.01.013. Epub 2016 Feb 1.
8
Exploring the Mechanism Responsible for Cellulase Thermostability by Structure-Guided Recombination.
PLoS One. 2016 Mar 17;11(3):e0147485. doi: 10.1371/journal.pone.0147485. eCollection 2016.
9
Comparing Residue Clusters from Thermophilic and Mesophilic Enzymes Reveals Adaptive Mechanisms.
PLoS One. 2016 Jan 7;11(1):e0145848. doi: 10.1371/journal.pone.0145848. eCollection 2016.
10
Mechanism of lignin inhibition of enzymatic biomass deconstruction.
Biotechnol Biofuels. 2015 Dec 21;8:217. doi: 10.1186/s13068-015-0379-8. eCollection 2015.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验