Fujita André, Vidal Maciel C, Takahashi Daniel Y
Department of Computer Science, Institute of Mathematics and Statistics, University of São Paulo São Paulo, Brazil.
Department of Psychology and Princeton Neuroscience Institute, Princeton University Princeton, NJ, USA.
Front Neurosci. 2017 Feb 14;11:66. doi: 10.3389/fnins.2017.00066. eCollection 2017.
One major problem in neuroscience is the comparison of functional brain networks of different populations, e.g., distinguishing the networks of controls and patients. Traditional algorithms are based on search for isomorphism between networks, assuming that they are deterministic. However, biological networks present randomness that cannot be well modeled by those algorithms. For instance, functional brain networks of distinct subjects of the same population can be different due to individual characteristics. Moreover, networks of subjects from different populations can be generated through the same stochastic process. Thus, a better hypothesis is that networks are generated by random processes. In this case, subjects from the same group are samples from the same random process, whereas subjects from different groups are generated by distinct processes. Using this idea, we developed a statistical test called ANOGVA to test whether two or more populations of graphs are generated by the same random graph model. Our simulations' results demonstrate that we can precisely control the rate of false positives and that the test is powerful to discriminate random graphs generated by different models and parameters. The method also showed to be robust for unbalanced data. As an example, we applied ANOGVA to an fMRI dataset composed of controls and patients diagnosed with autism or Asperger. ANOGVA identified the cerebellar functional sub-network as statistically different between controls and autism ( < 0.001).
神经科学中的一个主要问题是比较不同人群的功能性脑网络,例如区分对照组和患者的网络。传统算法基于搜索网络之间的同构性,假设它们是确定性的。然而,生物网络存在随机性,这些算法无法很好地对其进行建模。例如,同一人群中不同个体的功能性脑网络可能因个体特征而不同。此外,来自不同人群的个体的网络可能通过相同的随机过程生成。因此,一个更好的假设是网络由随机过程生成。在这种情况下,来自同一组的个体是来自同一随机过程的样本,而来自不同组的个体则由不同的过程生成。基于这一想法,我们开发了一种名为ANOGVA的统计检验,以测试两个或更多组图是否由相同的随机图模型生成。我们模拟的结果表明,我们可以精确控制误报率,并且该检验对于区分由不同模型和参数生成的随机图很有效。该方法对于不平衡数据也显示出稳健性。例如,我们将ANOGVA应用于一个由对照组以及被诊断患有自闭症或阿斯伯格综合征的患者组成的功能磁共振成像数据集。ANOGVA确定小脑功能子网在对照组和自闭症患者之间存在统计学差异(<0.001)。