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火山土壤作为新型一氧化碳氧化菌的来源:新种、新种、新种、新种,以及新种,属于复合体的一个成员。

Volcanic Soils as Sources of Novel CO-Oxidizing and : sp. nov., sp. nov., sp. nov., sp. nov., and sp. nov. a Member of the Complex.

作者信息

Weber Carolyn F, King Gary M

机构信息

Department of Biological Sciences, Louisiana State UniversityBaton Rouge, LA, USA; College of Health Sciences, Des Moines UniversityDes Moines, IA, USA.

Department of Biological Sciences, Louisiana State University Baton Rouge, LA, USA.

出版信息

Front Microbiol. 2017 Feb 21;8:207. doi: 10.3389/fmicb.2017.00207. eCollection 2017.

Abstract

Previous studies showed that members of the were important in the succession of aerobic, molybdenum-dependent CO oxidizing-bacteria on volcanic soils. During these studies, four isolates were obtained from Kilauea Volcano (Hawai'i, USA); one strain was isolated from Pico de Orizaba (Mexico) during a separate study. Based on 16S rRNA gene sequence similarities, the Pico de Orizaba isolate and the isolates from Kilauea Volcano were provisionally assigned to the genera and , respectively. Each of the isolates possessed a form I gene that encoded the catalytic subunit of carbon monoxide dehydrogenase (CODH); none of the most closely related type strains possessed or oxidized CO. Genome sequences for type strains facilitated an analysis of 16S rRNA gene sequence similarities and average nucleotide identities (ANI). ANI did not exceed 95% (the recommended cutoff for species differentiation) for any of the pairwise comparisons among 27 reference strains related to the new isolates. However, since the highest 16S rRNA gene sequence similarity among this set of reference strains was 98.93%, DNA-DNA hybridizations (DDH) were performed for two isolates whose 16S rRNA gene sequence similarities with their nearest phylogenetic neighbors were 98.96 and 99.11%. In both cases DDH values were <16%. Based on multiple variables, four of the isolates represent novel species within the : sp. nov. (type strain I2 = DSM 28029 = LMG 27952); sp. nov. (type strain WA = DSM 28027 = LMG 27949); sp. nov. (type strain PP52-1 = DSM 28028 = LMG 27950); and sp. nov. (type strain DNBP6-1 = DSM 28030 = LMG 28140). The remaining isolate represents the first CO-oxidizing member of the complex: sp. nov. (type strain PO-04-17-38 = DSM 28031 = LMG 28138).

摘要

先前的研究表明,[具体菌属名称未给出]的成员在火山土壤上需氧、依赖钼的一氧化碳氧化细菌的演替过程中很重要。在这些研究中,从基拉韦厄火山(美国夏威夷)获得了4株分离株;在另一项研究中,从奥里萨巴峰(墨西哥)分离出1株菌株。基于16S rRNA基因序列相似性,奥里萨巴峰分离株和基拉韦厄火山分离株分别被暂时归为[具体菌属名称未给出]属和[具体菌属名称未给出]属。每株分离株都拥有一个编码一氧化碳脱氢酶(CODH)催化亚基的I型[具体基因名称未给出]基因;与其关系最密切的模式菌株均不具备[具体功能未给出]或氧化CO的能力。[具体菌属名称未给出]型菌株的基因组序列有助于分析16S rRNA基因序列相似性和平均核苷酸同一性(ANI)。在与新分离株相关的27株参考菌株的任何两两比较中,ANI均未超过95%(物种区分的推荐临界值)。然而,由于这组参考菌株中最高的16S rRNA基因序列相似性为98.93%,因此对16S rRNA基因序列与其最近系统发育邻居的相似性分别为98.96%和99.11%的两株分离株进行了DNA-DNA杂交(DDH)。在这两种情况下,DDH值均<16%。基于多个变量,其中4株分离株代表[具体菌属名称未给出]属内的新物种:[新物种名称1] sp. nov.(模式菌株I2 = DSM 28029 = LMG 27952);[新物种名称2] sp. nov.(模式菌株WA = DSM 28027 = LMG 27949);[新物种名称3] sp. nov.(模式菌株PP52-1 = DSM 28028 = LMG 27950);以及[新物种名称4] sp. nov.(模式菌株DNBP6-1 = DSM 28030 = LMG 28140)。其余分离株代表[具体菌属名称未给出]复合体的首个CO氧化成员:[新物种名称5] sp. nov.(模式菌株PO-04-17-38 = DSM 28031 = LMG 28138)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e966/5318905/5951a4ce1599/fmicb-08-00207-g0001.jpg

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