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Paraburkholderia flagellata sp. nov. 和 Paraburkholderia adhaesiva sp. nov.,两种从中国广东鼎湖山生物圈保护区森林土壤中分离得到的新型物种。

Paraburkholderia flagellata sp. nov. and Paraburkholderia adhaesiva sp. nov., two novel species isolated from forest soil in Dinghushan Biosphere Reserve in Guangdong, China.

机构信息

State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2023 Oct;116(10):1023-1035. doi: 10.1007/s10482-023-01867-4. Epub 2023 Aug 17.

Abstract

Two Gram-stain-negative, aerobic, motile and short rod strains, designated 4D117 and ZD32-2, were isolated from the forest soils. Strains 4D117 and ZD32-2 grew optimally at pH 4.0-6.5, 20-33 °C and pH 4.5-7.0, 33 °C, respectively, and both at 0.5% (w/v) NaCl concentration. Strains 4D117 and ZD32-2 shared the highest 16S rRNA gene sequence similarity with P. acidiphila 7Q-K02 (99.1%) and P. ferrariae NBRC 106233 (98.7%), respectively. The genome size and G + C contents of strains 4D117 and ZD32-2 were 9,002,095 bp, 62.9% and 6,974,420 bp, 61.7%, respectively. The dDDH and ANI values between strains 4D117, ZD32-2 and closely related Paraburkholderia species were in the ranges of 21.9-51.6% and 82.9-94.4%, and 81.7% and 25.4% between themself, respectively. Functional genomic analysis showed both strains were capable of degrading contaminants, such as benzoate, anthranilic acid and catechol for 4D117, and benzene and catechol for ZD32-2, indicating that they may have potentials for soil pollutant treatment. The main polar lipids of strains 4D117 and ZD32-2 were phosphatidylglycerol, phosphatidylethanolamine and diphosphatidylglycerol. Strain 4D117 contained C, C cyclo ω8c and C ω7c and/or C ω6c, while strain ZD32-2 had C and C cyclo as their major cellular fatty acids (> 10%). Based on the phenotypic characters and genomic data, strains 4D117 and ZD32-2 represent two novel species of genus Paraburkholderia, for which the names Paraburkholderia flagellata sp. nov. (type strain 4D117 = GDMCC 1.2617 = NBRC 115278) and Paraburkholderia adhaesiva sp. nov. (type strain ZD32-2 = GDMCC 1.2622 = NBRC 115282) are proposed.

摘要

两株革兰氏阴性、需氧、能运动的短杆菌菌株,分别命名为 4D117 和 ZD32-2,从森林土壤中分离得到。菌株 4D117 和 ZD32-2 分别在 pH4.0-6.5 和 20-33°C 和 pH4.5-7.0、33°C 下生长最佳,且都能在 0.5%(w/v)NaCl 浓度下生长。菌株 4D117 和 ZD32-2 的 16S rRNA 基因序列与 P. acidiphila 7Q-K02(99.1%)和 P. ferrariae NBRC 106233(98.7%)的相似度最高。菌株 4D117 和 ZD32-2 的基因组大小和 G+C 含量分别为 9,002,095bp 和 62.9%、6,974,420bp 和 61.7%。菌株 4D117、ZD32-2 与密切相关的 Paraburkholderia 种之间的 dDDH 和 ANI 值分别在 21.9-51.6%和 82.9-94.4%之间,而在它们之间的 81.7%和 25.4%之间。功能基因组分析表明,两株菌都能够降解污染物,如 4D117 中的苯甲酸、邻氨基苯甲酸和儿茶酚,以及 ZD32-2 中的苯和儿茶酚,表明它们可能具有土壤污染物处理的潜力。菌株 4D117 和 ZD32-2 的主要极性脂为磷脂酰甘油、磷脂酰乙醇胺和双磷脂酰甘油。菌株 4D117 含有 C、C 环 ω8c 和 C ω7c 和/或 C ω6c,而菌株 ZD32-2 则以 C 和 C 环为主脂肪酸(>10%)。基于表型特征和基因组数据,菌株 4D117 和 ZD32-2 代表 Paraburkholderia 属的两个新种,分别命名为 Paraburkholderia flagellata sp. nov.(模式菌株 4D117=GDMCC 1.2617=NBRC 115278)和 Paraburkholderia adhaesiva sp. nov.(模式菌株 ZD32-2=GDMCC 1.2622=NBRC 115282)。

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