State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China.
Antonie Van Leeuwenhoek. 2023 Oct;116(10):1023-1035. doi: 10.1007/s10482-023-01867-4. Epub 2023 Aug 17.
Two Gram-stain-negative, aerobic, motile and short rod strains, designated 4D117 and ZD32-2, were isolated from the forest soils. Strains 4D117 and ZD32-2 grew optimally at pH 4.0-6.5, 20-33 °C and pH 4.5-7.0, 33 °C, respectively, and both at 0.5% (w/v) NaCl concentration. Strains 4D117 and ZD32-2 shared the highest 16S rRNA gene sequence similarity with P. acidiphila 7Q-K02 (99.1%) and P. ferrariae NBRC 106233 (98.7%), respectively. The genome size and G + C contents of strains 4D117 and ZD32-2 were 9,002,095 bp, 62.9% and 6,974,420 bp, 61.7%, respectively. The dDDH and ANI values between strains 4D117, ZD32-2 and closely related Paraburkholderia species were in the ranges of 21.9-51.6% and 82.9-94.4%, and 81.7% and 25.4% between themself, respectively. Functional genomic analysis showed both strains were capable of degrading contaminants, such as benzoate, anthranilic acid and catechol for 4D117, and benzene and catechol for ZD32-2, indicating that they may have potentials for soil pollutant treatment. The main polar lipids of strains 4D117 and ZD32-2 were phosphatidylglycerol, phosphatidylethanolamine and diphosphatidylglycerol. Strain 4D117 contained C, C cyclo ω8c and C ω7c and/or C ω6c, while strain ZD32-2 had C and C cyclo as their major cellular fatty acids (> 10%). Based on the phenotypic characters and genomic data, strains 4D117 and ZD32-2 represent two novel species of genus Paraburkholderia, for which the names Paraburkholderia flagellata sp. nov. (type strain 4D117 = GDMCC 1.2617 = NBRC 115278) and Paraburkholderia adhaesiva sp. nov. (type strain ZD32-2 = GDMCC 1.2622 = NBRC 115282) are proposed.
两株革兰氏阴性、需氧、能运动的短杆菌菌株,分别命名为 4D117 和 ZD32-2,从森林土壤中分离得到。菌株 4D117 和 ZD32-2 分别在 pH4.0-6.5 和 20-33°C 和 pH4.5-7.0、33°C 下生长最佳,且都能在 0.5%(w/v)NaCl 浓度下生长。菌株 4D117 和 ZD32-2 的 16S rRNA 基因序列与 P. acidiphila 7Q-K02(99.1%)和 P. ferrariae NBRC 106233(98.7%)的相似度最高。菌株 4D117 和 ZD32-2 的基因组大小和 G+C 含量分别为 9,002,095bp 和 62.9%、6,974,420bp 和 61.7%。菌株 4D117、ZD32-2 与密切相关的 Paraburkholderia 种之间的 dDDH 和 ANI 值分别在 21.9-51.6%和 82.9-94.4%之间,而在它们之间的 81.7%和 25.4%之间。功能基因组分析表明,两株菌都能够降解污染物,如 4D117 中的苯甲酸、邻氨基苯甲酸和儿茶酚,以及 ZD32-2 中的苯和儿茶酚,表明它们可能具有土壤污染物处理的潜力。菌株 4D117 和 ZD32-2 的主要极性脂为磷脂酰甘油、磷脂酰乙醇胺和双磷脂酰甘油。菌株 4D117 含有 C、C 环 ω8c 和 C ω7c 和/或 C ω6c,而菌株 ZD32-2 则以 C 和 C 环为主脂肪酸(>10%)。基于表型特征和基因组数据,菌株 4D117 和 ZD32-2 代表 Paraburkholderia 属的两个新种,分别命名为 Paraburkholderia flagellata sp. nov.(模式菌株 4D117=GDMCC 1.2617=NBRC 115278)和 Paraburkholderia adhaesiva sp. nov.(模式菌株 ZD32-2=GDMCC 1.2622=NBRC 115282)。