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计算机辅助形态学精子分析的金标准。

Gold-standard for computer-assisted morphological sperm analysis.

作者信息

Chang Violeta, Garcia Alejandra, Hitschfeld Nancy, Härtel Steffen

机构信息

Department of Computer Science, University of Chile, Beauchef 851, 3rd Floor, Santiago, RM, Chile; Laboratory for Scientific Image Analysis, SCIAN-Lab, Centro de Espermiograma Digital Asistido por Internet (CEDAI SpA), Centro de Informatica Medica y Telemedicina (CIMT), Centro Nacional en Sistemas de Informacion en Salud (CENS), Biomedical Neuroscience Institute (BNI), Instituo de Ciencias Biomedicas (ICBM), Faculty of Medicine, University of Chile, Av. Independencia 1027, Independencia, RM, Chile.

Laboratory for Scientific Image Analysis, SCIAN-Lab, Centro de Espermiograma Digital Asistido por Internet (CEDAI SpA), Centro de Informatica Medica y Telemedicina (CIMT), Centro Nacional en Sistemas de Informacion en Salud (CENS), Biomedical Neuroscience Institute (BNI), Instituo de Ciencias Biomedicas (ICBM), Faculty of Medicine, University of Chile, Av. Independencia 1027, Independencia, RM, Chile.

出版信息

Comput Biol Med. 2017 Apr 1;83:143-150. doi: 10.1016/j.compbiomed.2017.03.004. Epub 2017 Mar 2.

Abstract

BACKGROUND AND OBJECTIVE

Published algorithms for classification of human sperm heads are based on relatively small image databases that are not open to the public, and thus no direct comparison is available for competing methods. We describe a gold-standard for morphological sperm analysis (SCIAN-MorphoSpermGS), a dataset of sperm head images with expert-classification labels in one of the following classes: normal, tapered, pyriform, small or amorphous. This gold-standard is for evaluating and comparing known techniques and future improvements to present approaches for classification of human sperm heads for semen analysis. Although this paper does not provide a computational tool for morphological sperm analysis, we present a set of experiments for comparing sperm head description and classification common techniques. This classification base-line is aimed to be used as a reference for future improvements to present approaches for human sperm head classification.

METHODS

The gold-standard provides a label for each sperm head, which is achieved by majority voting among experts. The classification base-line compares four supervised learning methods (1- Nearest Neighbor, naive Bayes, decision trees and Support Vector Machine (SVM)) and three shape-based descriptors (Hu moments, Zernike moments and Fourier descriptors), reporting the accuracy and the true positive rate for each experiment. We used Fleiss' Kappa Coefficient to evaluate the inter-expert agreement and Fisher's exact test for inter-expert variability and statistical significant differences between descriptors and learning techniques.

RESULTS

Our results confirm the high degree of inter-expert variability in the morphological sperm analysis. Regarding the classification base line, we show that none of the standard descriptors or classification approaches is best suitable for tackling the problem of sperm head classification. We discovered that the correct classification rate was highly variable when trying to discriminate among non-normal sperm heads. By using the Fourier descriptor and SVM, we achieved the best mean correct classification: only 49%.

CONCLUSIONS

We conclude that the SCIAN-MorphoSpermGS will provide a standard tool for evaluation of characterization and classification approaches for human sperm heads. Indeed, there is a clear need for a specific shape-based descriptor for human sperm heads and a specific classification approach to tackle the problem of high variability within subcategories of abnormal sperm cells.

摘要

背景与目的

已发表的人类精子头部分类算法基于相对较小且不向公众开放的图像数据库,因此无法对竞争方法进行直接比较。我们描述了一种用于形态学精子分析的金标准(SCIAN-MorphoSpermGS),这是一个精子头部图像数据集,带有以下类别之一的专家分类标签:正常、锥形、梨形、小或无定形。该金标准用于评估和比较已知技术以及当前人类精子头部分类方法的未来改进。虽然本文未提供形态学精子分析的计算工具,但我们展示了一组用于比较精子头部描述和分类常用技术的实验。这个分类基线旨在用作未来改进当前人类精子头部分类方法的参考。

方法

金标准为每个精子头部提供一个标签,这是通过专家间的多数投票实现的。分类基线比较了四种监督学习方法(1-最近邻、朴素贝叶斯、决策树和支持向量机(SVM))以及三种基于形状的描述符(Hu矩、Zernike矩和傅里叶描述符),报告了每个实验的准确率和真阳性率。我们使用Fleiss' Kappa系数评估专家间的一致性,并使用Fisher精确检验评估专家间的变异性以及描述符和学习技术之间的统计显著差异。

结果

我们的结果证实了形态学精子分析中专家间变异性程度很高。关于分类基线,我们表明没有一种标准描述符或分类方法最适合解决精子头部分类问题。我们发现,在尝试区分非正常精子头部时,正确分类率变化很大。通过使用傅里叶描述符和SVM,我们实现了最佳平均正确分类:仅49%。

结论

我们得出结论,SCIAN-MorphoSpermGS将为评估人类精子头部的表征和分类方法提供一个标准工具。确实,显然需要一种针对人类精子头部的基于形状的特定描述符以及一种特定的分类方法来解决异常精子细胞亚类内高变异性的问题。

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