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叶绿体atpB-rbcL和trnL-F联合系统发育分析揭示了印度西高止山脉凤仙花属植物的起源。

A combined chloroplast atpB-rbcL and trnL-F phylogeny unveils the ancestry of balsams (Impatiens spp.) in the Western Ghats of India.

作者信息

Shajitha P P, Dhanesh N R, Ebin P J, Laly Joseph, Aneesha Devassy, Reshma John, Augustine Jomy, Linu Mathew

机构信息

School of Biosciences, Mahatma Gandhi University, Kottayam, Kerala, 686 560, India.

Department of Botany, St. Thomas College, Palai, Kottayam, Kerala, 686 574, India.

出版信息

3 Biotech. 2016 Dec;6(2):258. doi: 10.1007/s13205-016-0574-8. Epub 2016 Dec 2.

Abstract

Only a few Impatiens spp. from South India (one of the five centers of diversity for Impatiens species) were included in the published datum of molecular phylogeny of the family Balsaminaceae. The present investigation is a novel attempt to reveal the phylogenetic association of Impatiens species of South India, by placing them in the global phylogeny of Impatiens based on a combined analysis of two chloroplast genes. Thirty species of genus Impatiens were collected from different locations of South India. Total genomic DNA was extracted from fresh plant leaf, and polymerase chain reaction was carried out using atpB-rbcL and trnL-F intergenic spacer-specific forward and reverse primers. Thirteen sequences of Impatiens species from three centers of diversity were obtained from GenBank for reconstructing the evolutionary relationships within the genus Impatiens. Bayesian inference analysis was carried out in MrBayes v.3.2.2. This analysis supported Southeast Asia as the ancestral place of origin of extant Impatiens species. Molecular phylogeny of South Indian Impatiens spp. based on combined chloroplast sequences showed the same association as that of morphological taxonomy. Sections Scapigerae, Tomentosae, Sub-Umbellatae, and Racemosae showed Southeast Asian relationship, while sections Annuae and Microsepalae showed African affinity.

摘要

在凤仙花科分子系统发育的已发表数据中,仅纳入了来自印度南部(凤仙花属五个多样性中心之一)的少数凤仙花属物种。本研究是一项新的尝试,通过基于两个叶绿体基因的联合分析,将印度南部的凤仙花属物种置于凤仙花属的全球系统发育中,以揭示它们的系统发育关联。从印度南部不同地点收集了30种凤仙花属植物。从新鲜植物叶片中提取总基因组DNA,并使用atpB-rbcL和trnL-F基因间隔区特异性正向和反向引物进行聚合酶链反应。从GenBank获得了来自三个多样性中心的13个凤仙花属物种的序列,用于重建凤仙花属内的进化关系。在MrBayes v.3.2.2中进行贝叶斯推断分析。该分析支持东南亚是现存凤仙花属物种的祖先起源地。基于叶绿体序列组合的印度南部凤仙花属物种的分子系统发育显示出与形态分类相同的关联。Scapigerae、Tomentosae、Sub-Umbellatae和Racemosae组显示出与东南亚的关系,而Annuae和Microsepalae组显示出与非洲的亲缘关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b8b6/5135705/395a8e03d661/13205_2016_574_Fig1_HTML.jpg

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