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基于叶绿体基因组对亚属和亚属(组和组)的九个物种进行系统发育分析。

Phylogenetic analysis of nine species from subgenus and subgenus (Sect. and Sect. ) based on chloroplast genomes.

作者信息

Yang Mengqing, Lan Wenxiang, Zhong Jianhui, Ma Hui, Huang Xi, Huang Meijuan, Huang Haiquan

机构信息

College of Landscape Architecture and Horticulture Sciences, Southwest Research Center for Engineering Technology of Landscape Architecture (State Forestry and Grassland Administration), Yunnan Engineering Research Center for Functional Flower Resources and Industrialization, Research and Development Center of Landscape Plants and Horticulture Flowers, Southwest Forestry University, Kunming, Yunnan, China.

出版信息

Front Plant Sci. 2025 Mar 27;16:1541320. doi: 10.3389/fpls.2025.1541320. eCollection 2025.

Abstract

INTRODUCTION

The genus ( Balsaminaceae) is one of the three most important bedding plant genera globally, valued for its medicinal, ornamental, and economic properties. However, the morphological overlap among species and the lack of genomic data have limited our understanding of their molecular phylogenetic relationships.

METHODS

This study involved the sequencing of the chloroplast genomes of 9 Impatiens species, including var. , and . The study evaluated sequence divergence by comparing genomic features, repeat sequences, codon usage, IR expansion and contraction, sequence alignment, and selective pressures. It then constructed phylogenetic relationships using the maximum likelihood method, revealing the evolutionary relationships among these species.

RESULTS

The results indicated that the chloroplast genome sizes ranged from 151, 784 bp () to 152, 628 bp (), encoding between 108-115genes[77 to 81 protein-coding genes, 27 to 30 tRNA genes, and 4 rRNA genes]. Additionally, A detailed analysis was performed on the characteristics of repeat sequences, codon preferences, and IR region. Coding sections were more conserved than non-coding regions, and the IR regions were more conserved than the LSC and SSC regions, according to sequence variation and mutation hotspot analyses. The 9 species of were classified into subgenus and subgenus , including the sections and Racemosae, according to the phylogenetic tree.

DISCUSSION

This study presents the chloroplast genomes of 9 species within the genus , marking a novel attempt at using phylogenetic analysis to determine the taxonomic positions of species. It provides new molecular evidence for the systematic and evolutionary studies of species.

摘要

引言

凤仙花属(凤仙花科)是全球最重要的三种花坛植物属之一,因其药用、观赏和经济价值而受到重视。然而,物种间的形态重叠以及基因组数据的缺乏限制了我们对其分子系统发育关系的理解。

方法

本研究对9种凤仙花属植物的叶绿体基因组进行了测序,包括何氏凤仙变种、苏丹凤仙和新几内亚凤仙。该研究通过比较基因组特征、重复序列、密码子使用、IR区的扩张和收缩、序列比对以及选择压力来评估序列差异。然后使用最大似然法构建系统发育关系,揭示这些物种之间的进化关系。

结果

结果表明,叶绿体基因组大小从151,784 bp(何氏凤仙变种)到152,628 bp(新几内亚凤仙)不等,编码108 - 115个基因[77至81个蛋白质编码基因、27至30个tRNA基因和4个rRNA基因]。此外,对重复序列特征、密码子偏好和IR区进行了详细分析。根据序列变异和突变热点分析,编码区比非编码区更保守,IR区比LSC和SSC区更保守。根据系统发育树,9种凤仙花被分为凤仙花亚属和水角亚属,包括无距凤仙组和总状凤仙花组。

讨论

本研究展示了凤仙花属9个物种的叶绿体基因组,标志着利用系统发育分析来确定凤仙花属物种分类地位的新尝试。它为凤仙花属物种的系统发育和进化研究提供了新的分子证据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/46fa/11983548/e7a705f657de/fpls-16-1541320-g003.jpg

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