Pietsch Renée B, Vinatzer Boris A, Schmale David G
Department of Biological Sciences, Virginia Tech Blacksburg, VA, USA.
Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech Blacksburg, VA, USA.
Front Microbiol. 2017 Mar 9;8:318. doi: 10.3389/fmicb.2017.00318. eCollection 2017.
The bacterium is found in a variety of terrestrial and aquatic environments. Some strains of express an ice nucleation protein (hereafter referred to as Ice+) allowing them to catalyze the heterogeneous freezing of water. Though has been sampled intensively from freshwater sources in France, little is known about the genetic diversity of in natural aquatic habitats in North America. We collected samples of freshwater from three different depths in Claytor Lake, Virginia, USA between November 2015 and June 2016. Samples were plated on non-selective medium (TSA) and on medium selective for (KBC) and closely related species to estimate the total number of culturable bacteria and of , respectively. A droplet freezing assay was used to screen colonies for the Ice+ phenotype. Ice+ colonies were then molecularly identified based on the (citrate synthase) gene and the 16S rDNA gene. Phylogenetic analysis of sequences showed a surprising diversity of phylogenetic subgroups of . Frequencies of Ice+ isolates on selective medium ranged from 0 to 15% per sample with the highest frequency being found in spring. Our work shows that freshwater lakes can be a significant reservoir of Ice+ . Future work is needed to determine the contribution of from freshwater lakes to the populations present in the atmosphere and on plants and, in particular, if freshwater lakes could be an inoculum source of -caused plant disease outbreaks.
这种细菌存在于各种陆地和水生环境中。某些菌株表达一种冰核蛋白(以下简称Ice+),使其能够催化水的异质冻结。尽管已经从法国的淡水水源中密集采集了该细菌样本,但对于北美自然水生栖息地中该细菌的遗传多样性知之甚少。我们于2015年11月至2016年6月期间,从美国弗吉尼亚州克莱托湖的三个不同深度采集了淡水样本。样本分别接种在非选择性培养基(TSA)以及对该细菌(KBC)和密切相关物种具有选择性的培养基上,以分别估计可培养细菌总数和该细菌的数量。采用液滴冷冻试验筛选具有Ice+表型的菌落。然后根据柠檬酸合酶(citrate synthase)基因和16S rDNA基因对Ice+菌落进行分子鉴定。对该细菌序列的系统发育分析显示出该细菌系统发育亚群令人惊讶的多样性。在该细菌选择性培养基上,Ice+分离株的频率在每个样本的0%至15%之间,春季出现的频率最高。我们的研究表明,淡水湖可能是Ice+细菌的重要储存库。未来需要开展工作,以确定淡水湖中的该细菌对大气和植物中该细菌种群的贡献,特别是淡水湖是否可能是由该细菌引起的植物病害爆发的接种源。