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聚焦X射线自由电子激光与光系统II中析氧复合物的从头算结构之间的兼容性

A Spotlight on the Compatibility between XFEL and Ab Initio Structures of the Oxygen Evolving Complex in Photosystem II.

作者信息

Narzi Daniele, Mattioli Giuseppe, Bovi Daniele, Guidoni Leonardo

机构信息

Institute of Chemical Sciences and Engineering, École polytechnique fédérale de Lausanne, Av. F.-A. Forel 2, 1015, Lausanne, Switzerland.

<Istituto di Struttura della Materia del Consiglio Nazionale delle Ricerche, Via Salaria, Km. 29.300, 00016, Monterotondo (RM), Italy.

出版信息

Chemistry. 2017 May 23;23(29):6969-6973. doi: 10.1002/chem.201700722. Epub 2017 Apr 25.

Abstract

The Mn CaO cluster of photosystem II promotes a crucial step in the oxygenic photosynthesis, namely, the water-splitting reaction. The structure of such cluster in the S state of the Kok-Joliot's cycle has been recently resolved by femtosecond X-ray free-electron laser (XFEL) measurements. However, the XFEL results are characterized by appreciable discrepancies with previous X-ray diffraction (XRD), as well as with S models based on ab initio calculations. We provide here a unifying picture based on a combined set of DFT-based structures and molecular dynamics simulations of the S and S states. Our findings indicate that the XFEL results cannot be interpreted on the grounds of a single structure. A combination of two S stable isomers together with a minority contribution of the S state is necessary to reproduce XFEL results within 0.16 Å.

摘要

光系统II的锰钙氧簇在光合作用产氧过程中推动了关键步骤,即水裂解反应。最近通过飞秒X射线自由电子激光(XFEL)测量解析了科克-乔利奥循环S态下该簇的结构。然而,XFEL结果的特点是与先前的X射线衍射(XRD)以及基于从头计算的S模型存在明显差异。我们在此基于一组结合了S态和S态的基于密度泛函理论(DFT)的结构以及分子动力学模拟,给出了一个统一的图景。我们的研究结果表明,不能基于单一结构来解释XFEL结果。需要两种S稳定异构体以及S态的少量贡献相结合,才能在0.16埃范围内重现XFEL结果。

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