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焦点:冷冻电镜中数据收集与数据处理之间的接口

Focus: The interface between data collection and data processing in cryo-EM.

作者信息

Biyani Nikhil, Righetto Ricardo D, McLeod Robert, Caujolle-Bert Daniel, Castano-Diez Daniel, Goldie Kenneth N, Stahlberg Henning

机构信息

Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, University of Basel, Basel, Switzerland.

BioEM Lab, C-CINA, Biozentrum, University of Basel, Basel, Switzerland.

出版信息

J Struct Biol. 2017 May;198(2):124-133. doi: 10.1016/j.jsb.2017.03.007. Epub 2017 Mar 23.

Abstract

We present a new software package called Focus that interfaces cryo-transmission electron microscopy (cryo-EM) data collection with computer image processing. Focus creates a user-friendly environment to import and manage data recorded by direct electron detectors and perform elemental image processing tasks in a high-throughput manner while new data is being acquired at the microscope. It provides the functionality required to remotely monitor the progress of data collection and data processing, which is essential now that automation in cryo-EM allows a steady flow of images of single particles, two-dimensional crystals, or electron tomography data to be recorded in overnight sessions. The rapid detection of any errors that may occur greatly increases the productivity of recording sessions at the electron microscope.

摘要

我们展示了一个名为Focus的新软件包,它将冷冻透射电子显微镜(cryo-EM)数据采集与计算机图像处理相连接。Focus创建了一个用户友好的环境,用于导入和管理由直接电子探测器记录的数据,并在显微镜获取新数据时以高通量方式执行基本的图像处理任务。它提供了远程监控数据采集和数据处理进度所需的功能,鉴于冷冻电镜中的自动化使得在夜间能够稳定地记录单颗粒、二维晶体或电子断层扫描数据的图像流,这一功能至关重要。快速检测可能出现的任何错误极大地提高了电子显微镜记录过程的效率。

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