Gahoi Shachi, Gautam Budhayash
Department of Computational Biology and Bioinformatics, Sam Higginbottom Institute of Agriculture Technology & Sciences,Allahabad, 211007, India.
Bioinformation. 2016 Dec 14;12(12):412-415. doi: 10.6026/97320630012412. eCollection 2016.
Insulin-like (ins) peptides play an important role in development and metabolism across the metazoa. In nematodes, these are also required for dauer formation and longevity and are expressed in different types of neurons across various life stages which demonstrate their role in parasites and could become possible targets for parasite control. To date, many nematode genomes are publically available. However, a systematic screening of ins peptides across different nematode group has not been reported. In the present study, we systematically identified ins peptides in the secretomes of 73 nematodes with fully sequenced genomes covering five different groups viz. plant parasitic, animal parasitic, human parasitic, entomopathogenic and free living nematodes. From the total of 93,949 secretory proteins, 176 proteins were uniquely mapped to 40 identified C. elegans ins families. The obtained result showed that 74.15% of the identified ins proteins were represented in free living nematodes only and remaining 25.84% were combinedly identified in all other nematode groups. The ins-1, ins-17 and ins-18 were the only ins families which were detected in all the studied nematode groups. Out of 176 proteins, 96 of ins proteins were predicted as hydrophilic in nature and 39 proteins were found stable using ProtParam analysis. Our study provides insight into the distribution of ins peptides across different group of nematodes and this information could be useful for further experimental study.
胰岛素样(ins)肽在后生动物的发育和代谢中发挥着重要作用。在秀丽隐杆线虫中,这些肽对于滞育形成和寿命延长也是必需的,并且在不同生命阶段的不同类型神经元中表达,这表明它们在寄生虫中的作用,并且可能成为寄生虫控制的潜在靶点。迄今为止,许多线虫基因组已公开可用。然而,尚未有关于跨不同线虫群体对ins肽进行系统筛选的报道。在本研究中,我们系统地鉴定了73种线虫分泌组中的ins肽,这些线虫具有完全测序的基因组,涵盖五个不同的类群,即植物寄生线虫、动物寄生线虫、人类寄生线虫、昆虫病原线虫和自由生活线虫。在总共93,949种分泌蛋白中,有176种蛋白被唯一地映射到40个已鉴定的秀丽隐杆线虫ins家族。所得结果表明,74.15%的已鉴定ins蛋白仅在自由生活线虫中出现,其余25.84%在所有其他线虫类群中共同鉴定到。ins-1、ins-17和ins-18是在所有研究的线虫类群中都检测到的仅有的ins家族。在176种蛋白中,96种ins蛋白被预测为亲水性,并且使用ProtParam分析发现39种蛋白是稳定的。我们的研究提供了关于ins肽在不同线虫类群中分布的见解,这些信息可能有助于进一步的实验研究。