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芽殖酵母端粒生物学的全基因组研究。

Genome-wide studies of telomere biology in budding yeast.

作者信息

Harari Yaniv, Kupiec Martin

机构信息

Department of Molecular Microbiology and Biotechnology, Tel Aviv University, Ramat Aviv 69978, Israel.

出版信息

Microb Cell. 2014 Mar 1;1(3):70-80. doi: 10.15698/mic2014.01.132.

DOI:10.15698/mic2014.01.132
PMID:28357225
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5349225/
Abstract

Telomeres are specialized DNA-protein structures at the ends of eukaryotic chromosomes. Telomeres are essential for chromosomal stability and integrity, as they prevent chromosome ends from being recognized as double strand breaks. In rapidly proliferating cells, telomeric DNA is synthesized by the enzyme telomerase, which copies a short template sequence within its own RNA moiety, thus helping to solve the "end-replication problem", in which information is lost at the ends of chromosomes with each DNA replication cycle. The basic mechanisms of telomere length, structure and function maintenance are conserved among eukaryotes. Studies in the yeast have been instrumental in deciphering the basic aspects of telomere biology. In the last decade, technical advances, such as the availability of mutant collections, have allowed carrying out systematic genome-wide screens for mutants affecting various aspects of telomere biology. In this review we summarize these efforts, and the insights that this Systems Biology approach has produced so far.

摘要

端粒是真核生物染色体末端的特殊DNA-蛋白质结构。端粒对于染色体的稳定性和完整性至关重要,因为它们可防止染色体末端被识别为双链断裂。在快速增殖的细胞中,端粒DNA由端粒酶合成,端粒酶在其自身RNA部分内复制短模板序列,从而有助于解决“末端复制问题”,即在每个DNA复制周期中,染色体末端的信息会丢失。端粒长度、结构和功能维持的基本机制在真核生物中是保守的。对酵母的研究有助于阐明端粒生物学的基本方面。在过去十年中,技术进步,如突变体库的可用性,使得能够对影响端粒生物学各个方面的突变体进行全基因组范围的系统筛选。在本综述中,我们总结了这些工作以及这种系统生物学方法迄今所产生的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21e4/5349225/14838cdeb253/mic-01-070-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21e4/5349225/94a26308d35a/mic-01-070-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21e4/5349225/14838cdeb253/mic-01-070-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21e4/5349225/94a26308d35a/mic-01-070-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21e4/5349225/14838cdeb253/mic-01-070-g02.jpg

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Nat Commun. 2023 Jun 1;14(1):3038. doi: 10.1038/s41467-023-38499-1.
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Telomeres are shorter in wild Saccharomyces cerevisiae isolates than in domesticated ones.野生酿酒酵母分离株的端粒比驯化的短。
Genetics. 2023 Mar 2;223(3). doi: 10.1093/genetics/iyac186.
3
A comparative analysis of telomere length maintenance circuits in fission and budding yeast.

本文引用的文献

1
Environmental stresses disrupt telomere length homeostasis.环境压力破坏端粒长度的内稳态。
PLoS Genet. 2013;9(9):e1003721. doi: 10.1371/journal.pgen.1003721. Epub 2013 Sep 5.
2
Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions. Rif1 和 Rif2 通过多价 Rap1 相互作用塑造端粒功能和结构。
Cell. 2013 Jun 6;153(6):1340-53. doi: 10.1016/j.cell.2013.05.007.
3
Short telomeres: from dyskeratosis congenita to sporadic aplastic anemia and malignancy.短端粒:从先天性角化不良到特发性再生障碍性贫血和恶性肿瘤。
裂殖酵母和芽殖酵母中端粒长度维持机制的比较分析。
Front Genet. 2022 Nov 4;13:1033113. doi: 10.3389/fgene.2022.1033113. eCollection 2022.
4
Long Telomeres Do Not Affect Cellular Fitness in Yeast.长端粒不影响酵母的细胞适应性。
mBio. 2017 Aug 29;8(4):e01314-17. doi: 10.1128/mBio.01314-17.
5
Mec1 is needed for extensive telomere elongation in response to ethanol in yeast.在酵母中,响应乙醇时,广泛的端粒延长需要Mec1。
Curr Genet. 2018 Feb;64(1):223-234. doi: 10.1007/s00294-017-0728-1. Epub 2017 Aug 5.
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Multiple genetic pathways regulate replicative senescence in telomerase-deficient yeast.多种遗传途径调节端粒酶缺陷酵母中的复制性衰老。
Aging Cell. 2013 Aug;12(4):719-27. doi: 10.1111/acel.12099. Epub 2013 Jun 28.
5
Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system.使用最小酶系统重建和表征真核 N6-硫代氨甲酰化 tRNA。
Nucleic Acids Res. 2013 Jul;41(12):6332-46. doi: 10.1093/nar/gkt322. Epub 2013 Apr 25.
6
Cdc13 at a crossroads of telomerase action.端粒酶作用的十字路口处的 Cdc13。
Front Oncol. 2013 Feb 28;3:39. doi: 10.3389/fonc.2013.00039. eCollection 2013.
7
Alternative lengthening of telomeres: remodeling the telomere architecture.端粒的替代性延长:重塑端粒结构。
Front Oncol. 2013 Feb 20;3:27. doi: 10.3389/fonc.2013.00027. eCollection 2013.
8
Telomerase-null survivor screening identifies novel telomere recombination regulators.端粒酶缺失存活者筛查鉴定出新的端粒重组调控因子。
PLoS Genet. 2013;9(1):e1003208. doi: 10.1371/journal.pgen.1003208. Epub 2013 Jan 17.
9
Novel connections between DNA replication, telomere homeostasis, and the DNA damage response revealed by a genome-wide screen for TEL1/ATM interactions in Saccharomyces cerevisiae.通过在酿酒酵母中进行全基因组筛选以发现 TEL1/ATM 相互作用,揭示了 DNA 复制、端粒稳态和 DNA 损伤反应之间的新联系。
Genetics. 2013 Apr;193(4):1117-33. doi: 10.1534/genetics.113.149849. Epub 2013 Feb 1.
10
RPA provides checkpoint-independent cell cycle arrest and prevents recombination at uncapped telomeres of Saccharomyces cerevisiae.RPA 提供了与检验点无关的细胞周期停滞,并防止酿酒酵母未封闭端粒处发生重组。
DNA Repair (Amst). 2013 Mar 1;12(3):212-26. doi: 10.1016/j.dnarep.2012.12.002. Epub 2013 Jan 9.