Vitova Lenka, Tuma Zdenek, Moravec Jiri, Kvapil Milan, Matejovic Martin, Mares Jan
Department of Internal Medicine, Teaching Hospital Motol, V Uvalu 84, Prague, 5, 150 06, Czech Republic.
Proteomic Laboratory, Charles University School of Medicine in Pilsen, alej Svobody 1655/76, Pilsen, 323 00, Czech Republic.
BMC Nephrol. 2017 Mar 30;18(1):112. doi: 10.1186/s12882-017-0519-4.
Additional urinary biomarkers for diabetic nephropathy (DN) are needed, providing early and reliable diagnosis and new insights into its mechanisms. Rigorous selection criteria and homogeneous study population may improve reproducibility of the proteomic approach.
Long-term type 1 diabetes patients without metabolic comorbidities were included, 11 with sustained microalbuminuria (MA) and 14 without MA (nMA). Morning urine proteins were precipitated and resolved by 2D electrophoresis. Principal component analysis (PCA) and Projection to latent structures discriminatory analysis (PLS-DA) were adopted to assess general data validity, to pick protein fractions for identification with mass spectrometry (MS), and to test predictive value of the resulting model.
Proteins (n = 113) detected in more than 90% patients were considered representative. Unsupervised PCA showed excellent natural data clustering without outliers. Protein spots reaching Variable Importance in Projection score above 1 in PLS (n = 42) were subjected to MS, yielding 33 positive identifications. The PLS model rebuilt with these proteins achieved accurate classification of all patients (R2X = 0.553, R2Y = 0.953, Q2 = 0.947). Thus, multiple earlier recognized biomarkers of DN were confirmed and several putative new biomarkers suggested. Among them, the highest significance was met in kininogen-1. Its activation products detected in nMA patients exceeded by an order of magnitude the amount found in MA patients.
Reducing metabolic complexity of the diseased and control groups by meticulous patients' selection allows to focus the biomarker search in DN. Suggested new biomarkers, particularly kininogen fragments, exhibit the highest degree of correlation with MA and substantiate validation in larger and more varied cohorts.
糖尿病肾病(DN)需要更多的尿液生物标志物,以实现早期可靠诊断并深入了解其发病机制。严格的选择标准和同质化的研究人群可能会提高蛋白质组学方法的可重复性。
纳入无代谢合并症的长期1型糖尿病患者,其中11例有持续性微量白蛋白尿(MA),14例无MA(nMA)。早晨尿液中的蛋白质经沉淀后通过二维电泳进行分离。采用主成分分析(PCA)和潜在结构投影判别分析(PLS-DA)来评估总体数据有效性,挑选蛋白质组分进行质谱(MS)鉴定,并测试所得模型的预测价值。
在超过90%的患者中检测到的蛋白质(n = 113)被视为具有代表性。无监督PCA显示出良好的自然数据聚类,无异常值。在PLS中投影变量重要性得分高于1的蛋白质斑点(n = 42)进行MS分析,得到33个阳性鉴定结果。用这些蛋白质重建的PLS模型实现了对所有患者的准确分类(R2X = 0.553,R2Y = 0.953,Q2 = 0.947)。因此,多个先前已确认的DN生物标志物得到证实,并提出了一些假定的新生物标志物。其中,激肽原-1的意义最为显著。在nMA患者中检测到的其激活产物比MA患者中发现的量高出一个数量级。
通过精心挑选患者来降低疾病组和对照组的代谢复杂性,有助于聚焦DN生物标志物的搜索。所提出的新生物标志物,特别是激肽原片段,与MA的相关性最高,并在更大且更多样化的队列中得到验证。