• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

探索结构域架构对二萜合酶催化功能的影响。

Exploring the Influence of Domain Architecture on the Catalytic Function of Diterpene Synthases.

作者信息

Pemberton Travis A, Chen Mengbin, Harris Golda G, Chou Wayne K W, Duan Lian, Köksal Mustafa, Genshaft Alex S, Cane David E, Christianson David W

机构信息

Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania , 231 South 34th Street, Philadelphia, Pennsylvania 19104-6323, United States.

Department of Chemistry, Brown University , Box H, Providence, Rhode Island 02912, United States.

出版信息

Biochemistry. 2017 Apr 11;56(14):2010-2023. doi: 10.1021/acs.biochem.7b00137. Epub 2017 Mar 31.

DOI:10.1021/acs.biochem.7b00137
PMID:28362483
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5474940/
Abstract

Terpenoid synthases catalyze isoprenoid cyclization reactions underlying the generation of more than 80,000 natural products. Such dramatic chemodiversity belies the fact that these enzymes generally consist of only three domain folds designated as α, β, and γ. Catalysis by class I terpenoid synthases occurs exclusively in the α domain, which is found with α, αα, αβ, and αβγ domain architectures. Here, we explore the influence of domain architecture on catalysis by taxadiene synthase from Taxus brevifolia (TbTS, αβγ), fusicoccadiene synthase from Phomopsis amygdali (PaFS, (αα)), and ophiobolin F synthase from Aspergillus clavatus (AcOS, αα). We show that the cyclization fidelity and catalytic efficiency of the α domain of TbTS are severely compromised by deletion of the βγ domains; however, retention of the β domain preserves significant cyclization fidelity. In PaFS, we previously demonstrated that one α domain similarly influences catalysis by the other α domain [ Chen , M. , Chou , W. K. W. , Toyomasu , T. , Cane , D. E. , and Christianson , D. W. ( 2016 ) ACS Chem. Biol. 11 , 889 - 899 ]. Here, we show that the hexameric quaternary structure of PaFS enables cluster channeling. We also show that the α domains of PaFS and AcOS can be swapped so as to make functional chimeric αα synthases. Notably, both cyclization fidelity and catalytic efficiency are altered in all chimeric synthases. Twelve newly formed and uncharacterized C diterpene products and three C sesterterpene products are generated by these chimeras. Thus, engineered αβγ and αα terpenoid cyclases promise to generate chemodiversity in the greater family of terpenoid natural products.

摘要

萜类合酶催化异戊二烯环化反应,这些反应是超过80000种天然产物生成的基础。如此显著的化学多样性掩盖了一个事实,即这些酶通常仅由三种指定为α、β和γ的结构域折叠组成。I类萜类合酶的催化作用仅发生在α结构域,该结构域存在于α、αα、αβ和αβγ结构域架构中。在这里,我们探讨了结构域架构对来自短叶红豆杉的紫杉二烯合酶(TbTS,αβγ)、来自扁桃叶拟茎点霉的香豆二烯合酶(PaFS,(αα))和来自棒曲霉的蛇孢菌素F合酶(AcOS,αα)催化作用的影响。我们表明,TbTS的α结构域的环化保真度和催化效率因βγ结构域的缺失而严重受损;然而,β结构域的保留保留了显著的环化保真度。在PaFS中,我们之前证明一个α结构域同样会影响另一个α结构域的催化作用[Chen, M., Chou, W. K. W., Toyomasu, T., Cane, D. E., and Christianson, D. W. (2016) ACS Chem. Biol. 11, 889 - 899]。在这里,我们表明PaFS的六聚体四级结构能够实现簇通道化。我们还表明,PaFS和AcOS的α结构域可以交换,从而制造出有功能的嵌合αα合酶。值得注意的是,所有嵌合合酶的环化保真度和催化效率都发生了改变。这些嵌合体产生了12种新形成的、未表征的C二萜产物和3种C倍半萜产物。因此,工程化的αβγ和αα萜类环化酶有望在更大的萜类天然产物家族中产生化学多样性。

相似文献

1
Exploring the Influence of Domain Architecture on the Catalytic Function of Diterpene Synthases.探索结构域架构对二萜合酶催化功能的影响。
Biochemistry. 2017 Apr 11;56(14):2010-2023. doi: 10.1021/acs.biochem.7b00137. Epub 2017 Mar 31.
2
Assembly-Line Catalysis in Bifunctional Terpene Synthases.双功能萜类合酶中的装配线催化作用。
Acc Chem Res. 2021 Oct 19;54(20):3780-3791. doi: 10.1021/acs.accounts.1c00296. Epub 2021 Jul 13.
3
Structure and mechanism of the diterpene cyclase ent-copalyl diphosphate synthase.二萜环化酶 ent-贝壳杉烯二磷酸合酶的结构与机制。
Nat Chem Biol. 2011 May 22;7(7):431-3. doi: 10.1038/nchembio.578.
4
An Unusual Chimeric Diterpene Synthase from Emericella variecolor and Its Functional Conversion into a Sesterterpene Synthase by Domain Swapping.一株变色栓菌来源的新型二萜合酶及其通过结构域交换的功能转化为甾体合酶。
Angew Chem Int Ed Engl. 2016 Jan 26;55(5):1658-61. doi: 10.1002/anie.201509263. Epub 2015 Nov 6.
5
Identification of ophiobolin F synthase by a genome mining approach: a sesterterpene synthase from Aspergillus clavatus.通过基因组挖掘方法鉴定蛇孢菌素 F 合酶:来自土曲霉的倍半萜合酶。
Org Lett. 2013 Feb 1;15(3):594-7. doi: 10.1021/ol303408a. Epub 2013 Jan 16.
6
Gibberellin-biosynthetic ent-kaurene synthases in higher plants do not require their non-catalytic domains for the catalysis.高等植物中赤霉素生物合成的 ent-贝壳杉烯合酶不需要其非催化结构域进行催化。
Biochem J. 2024 Jun 19;481(12):779-791. doi: 10.1042/BCJ20240162.
7
Structural insight on assembly-line catalysis in terpene biosynthesis.萜类生物合成中流水线催化的结构见解。
Nat Commun. 2021 Jun 9;12(1):3487. doi: 10.1038/s41467-021-23589-9.
8
Methods for the preparation and analysis of the diterpene cyclase fusicoccadiene synthase.二萜环化酶镰刀菌二烯合酶的制备与分析方法
Methods Enzymol. 2024;699:89-119. doi: 10.1016/bs.mie.2023.11.003. Epub 2023 Dec 8.
9
Multi-domain terpenoid cyclase architecture and prospects for proximity in bifunctional catalysis.多结构域萜类环化酶结构及双功能催化中的邻近效应前景
Curr Opin Struct Biol. 2016 Dec;41:27-37. doi: 10.1016/j.sbi.2016.05.010. Epub 2016 Jun 7.
10
Taxadiene synthase structure and evolution of modular architecture in terpene biosynthesis.紫杉烯合酶结构与萜类生物合成中模块化架构的演化。
Nature. 2011 Jan 6;469(7328):116-20. doi: 10.1038/nature09628. Epub 2010 Dec 15.

引用本文的文献

1
Cryo-EM Structure of the Cyclase Domain and Evaluation of Substrate Channeling in a Bifunctional Class II Terpene Synthase.双功能II类萜烯合酶中环化酶结构域的冷冻电镜结构及底物通道化评估
bioRxiv. 2025 Aug 20:2025.08.20.671325. doi: 10.1101/2025.08.20.671325.
2
Structure of bifunctional variediene synthase yields unique insight on biosynthetic diterpene assembly and cyclization.双功能多烯合酶的结构为二萜生物合成组装和环化提供了独特见解。
Nat Commun. 2025 Jun 2;16(1):5089. doi: 10.1038/s41467-025-60537-3.
3
Crystal Structure and Catalytic Mechanism of Drimenol Synthase, a Bifunctional Terpene Cyclase-Phosphatase.

本文引用的文献

1
A Pair of Residues That Interactively Affect Diterpene Synthase Product Outcome.一对相互影响二萜合酶产物结果的残基。
ACS Chem Biol. 2017 Mar 17;12(3):862-867. doi: 10.1021/acschembio.6b01075. Epub 2017 Feb 14.
2
Extending a Single Residue Switch for Abbreviating Catalysis in Plant -Kaurene Synthases.扩展单个残基开关以缩短植物贝壳杉烯合酶中的催化作用
Front Plant Sci. 2016 Nov 22;7:1765. doi: 10.3389/fpls.2016.01765. eCollection 2016.
3
Why do plants produce so many terpenoid compounds?植物为什么会产生如此多的萜类化合物?
双功能萜烯环化酶-磷酸酶——地锦烯醇合酶的晶体结构与催化机制
bioRxiv. 2025 Feb 12:2025.02.11.637696. doi: 10.1101/2025.02.11.637696.
4
Sustainable biosynthesis of valuable diterpenes in microbes.微生物中珍贵二萜类化合物的可持续生物合成。
Eng Microbiol. 2022 Nov 10;3(1):100058. doi: 10.1016/j.engmic.2022.100058. eCollection 2023 Mar.
5
Engineering substrate channeling in a bifunctional terpene synthase.工程化双功能萜烯合酶的底物导向性。
Proc Natl Acad Sci U S A. 2024 Oct 8;121(41):e2408064121. doi: 10.1073/pnas.2408064121. Epub 2024 Oct 4.
6
Methods for the preparation and analysis of the diterpene cyclase fusicoccadiene synthase.二萜环化酶镰刀菌二烯合酶的制备与分析方法
Methods Enzymol. 2024;699:89-119. doi: 10.1016/bs.mie.2023.11.003. Epub 2023 Dec 8.
7
Mining methods and typical structural mechanisms of terpene cyclases.萜烯环化酶的挖掘方法及典型结构机制
Bioresour Bioprocess. 2021 Jul 28;8(1):66. doi: 10.1186/s40643-021-00421-2.
8
Engineering Substrate Channeling in Assembly-Line Terpene Biosynthesis.装配线萜类生物合成中的工程化底物通道化
bioRxiv. 2024 Mar 28:2024.03.25.586617. doi: 10.1101/2024.03.25.586617.
9
Chemical and transcriptomic analyses of leaf trichomes from Cistus creticus subsp. creticus reveal the biosynthetic pathways of certain labdane-type diterpenoids and their acetylated forms.从克里特柳穿叶腺毛的化学和转录组分析揭示了某些贝壳杉烷型二萜及其乙酰化形式的生物合成途径。
J Exp Bot. 2024 Jun 7;75(11):3431-3451. doi: 10.1093/jxb/erae098.
10
Two-Phase Fermentation Systems for Microbial Production of Plant-Derived Terpenes.用于植物源萜类化合物微生物生产的两相发酵系统。
Molecules. 2024 Mar 2;29(5):1127. doi: 10.3390/molecules29051127.
New Phytol. 2018 Nov;220(3):692-702. doi: 10.1111/nph.14178. Epub 2016 Sep 8.
4
Multi-domain terpenoid cyclase architecture and prospects for proximity in bifunctional catalysis.多结构域萜类环化酶结构及双功能催化中的邻近效应前景
Curr Opin Struct Biol. 2016 Dec;41:27-37. doi: 10.1016/j.sbi.2016.05.010. Epub 2016 Jun 7.
5
Structure and Function of Fusicoccadiene Synthase, a Hexameric Bifunctional Diterpene Synthase.壳梭孢素合酶的结构与功能,一种六聚体双功能二萜合酶
ACS Chem Biol. 2016 Apr 15;11(4):889-99. doi: 10.1021/acschembio.5b00960. Epub 2016 Jan 6.
6
Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with αα Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence.土臭素合酶的结构研究,一种具有αα结构域架构的双功能倍半萜合酶,催化独特的环化-碎片化反应序列。
Biochemistry. 2015 Dec 8;54(48):7142-55. doi: 10.1021/acs.biochem.5b01143. Epub 2015 Nov 24.
7
An Unusual Chimeric Diterpene Synthase from Emericella variecolor and Its Functional Conversion into a Sesterterpene Synthase by Domain Swapping.一株变色栓菌来源的新型二萜合酶及其通过结构域交换的功能转化为甾体合酶。
Angew Chem Int Ed Engl. 2016 Jan 26;55(5):1658-61. doi: 10.1002/anie.201509263. Epub 2015 Nov 6.
8
One amino acid makes the difference: the formation of ent-kaurene and 16α-hydroxy-ent-kaurane by diterpene synthases in poplar.一种氨基酸起着关键作用:杨树中二萜合酶催化贝壳杉烯和16α-羟基贝壳杉烷的形成。
BMC Plant Biol. 2015 Oct 28;15:262. doi: 10.1186/s12870-015-0647-6.
9
Molecular Basis for Stellatic Acid Biosynthesis: A Genome Mining Approach for Discovery of Sesterterpene Synthases.Stellatic 酸生物合成的分子基础:通过基因组挖掘发现甾体合成酶的方法。
Org Lett. 2015 Sep 18;17(18):4644-7. doi: 10.1021/acs.orglett.5b02404. Epub 2015 Sep 9.
10
Genome Mining for Sesterterpenes Using Bifunctional Terpene Synthases Reveals a Unified Intermediate of Di/Sesterterpenes.利用双功能萜烯合酶进行基因组挖掘发现二/倍半萜的统一中间体。
J Am Chem Soc. 2015 Sep 16;137(36):11846-53. doi: 10.1021/jacs.5b08319. Epub 2015 Sep 4.