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螳螂(网翅目,螳螂科)的比较线粒体基因组分析:异常基因间隔区的起源与进化

Comparative Mitogenomic Analyses of Praying Mantises (Dictyoptera, Mantodea): Origin and Evolution of Unusual Intergenic Gaps.

作者信息

Zhang Hong-Li, Ye Fei

机构信息

School of Life Sciences, Datong University, Datong 037009, China.

College of Ecology and Evolution, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China;; State Key Laboratory of Biocontrol, Sun Yat-sen University, Guangzhou 510275, China;; College of Life Sciences, Shaanxi Normal University, Xi'an 710062, China.

出版信息

Int J Biol Sci. 2017 Feb 25;13(3):367-382. doi: 10.7150/ijbs.17035. eCollection 2017.

DOI:10.7150/ijbs.17035
PMID:28367101
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5370444/
Abstract

Praying mantises are a diverse group of predatory insects. Although some Mantodea mitogenomes have been reported, a comprehensive comparative and evolutionary genomic study is lacking for this group. In the present study, four new mitogenomes were sequenced, annotated, and compared to the previously published mitogenomes of other Mantodea species. Most Mantodea mitogenomes share a typical set of mitochondrial genes and a putative control region (CR). Additionally, and most intriguingly, another large non-coding region (LNC) was detected between and in all six Paramantini mitogenomes examined. The main section in this common region of Paramantini may have initially originated from the corresponding control region for each species, whereas sequence differences between the LNCs and CRs and phylogenetic analyses indicate that LNC and CR are largely independently evolving. Namely, the LNC (the duplicated CR) may have subsequently degenerated during evolution. Furthermore, evidence suggests that special intergenic gaps have been introduced in some species through gene rearrangement and duplication. These gaps are actually the original abutting sequences of migrated or duplicated genes. Some gaps (G5 and G6) are homologous to the 5' and 3' surrounding regions of the duplicated gene in the original gene order, and another specific gap (G7) has tandem repeats. We analysed the phylogenetic relationships of fifteen Mantodea species using 37 concatenated mitochondrial genes and detected several synapomorphies unique to species in some clades.

摘要

螳螂是一类多样化的捕食性昆虫。尽管已经报道了一些螳螂目的线粒体基因组,但该类群缺乏全面的比较和进化基因组学研究。在本研究中,对四个新的线粒体基因组进行了测序、注释,并与之前发表的其他螳螂目物种的线粒体基因组进行了比较。大多数螳螂目的线粒体基因组共享一组典型的线粒体基因和一个假定的控制区(CR)。此外,最有趣的是,在所检测的所有六个副螳科线粒体基因组中,在[具体位置1]和[具体位置2]之间检测到另一个大的非编码区(LNC)。副螳科这个共同区域的主要部分最初可能源自每个物种相应的控制区,而LNC和CR之间的序列差异以及系统发育分析表明,LNC和CR在很大程度上是独立进化的。也就是说,LNC(复制的CR)可能在进化过程中随后发生了退化。此外,有证据表明,一些物种通过基因重排和复制引入了特殊的基因间隔。这些间隔实际上是迁移或复制基因的原始邻接序列。一些间隔(G5和G6)与原始基因顺序中复制基因的5'和3'侧翼区域同源,另一个特定间隔(G7)具有串联重复。我们使用37个串联的线粒体基因分析了15种螳螂目的系统发育关系,并在一些分支中检测到了几个物种特有的共有衍征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/4bef18e4dfbf/ijbsv13p0367g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/c70f8d2eb8b5/ijbsv13p0367g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/4bef18e4dfbf/ijbsv13p0367g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/c70f8d2eb8b5/ijbsv13p0367g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/bd576b2ebeaa/ijbsv13p0367g002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/6fac9a25e429/ijbsv13p0367g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/f967b946aaf9/ijbsv13p0367g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/48ea8372f4db/ijbsv13p0367g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7755/5370444/4bef18e4dfbf/ijbsv13p0367g009.jpg

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