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大肠杆菌位点特异性DNA倒位的宿主因子:fis基因的克隆与特性分析

Escherichia coli host factor for site-specific DNA inversion: cloning and characterization of the fis gene.

作者信息

Koch C, Vandekerckhove J, Kahmann R

机构信息

Max-Planck-Institut für Molekulare Genetik, Otto-Warburg-Laboratorium, Berlin, Federal Republic of Germany.

出版信息

Proc Natl Acad Sci U S A. 1988 Jun;85(12):4237-41. doi: 10.1073/pnas.85.12.4237.

DOI:10.1073/pnas.85.12.4237
PMID:2837762
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC280402/
Abstract

The Escherichia coli (Es. coli) protein Fis (factor for inversion stimulation) stimulates site-specific DNA inversion of the G segment in phage Mu by binding to a recombinational enhancer. By using synthetic oligonucleotides deduced from the amino-terminal amino acid sequence, we have cloned the gene (termed fis) encoding this specific DNA-binding protein. The DNA sequence shows that the Fis protein is basic and contains 98 amino acids. A helix-turn-helix sequence motif characteristic of many DNA-binding proteins is located at the carboxyl-terminal end of the protein. By marker exchange, we have constructed an insertion mutation of fis. Fis is nonessential for Es. coli growth; however, inversion of the G segment of a Mu prophage was not detected in the fis mutant. The fis gene is located between 71 and 72 min on the Es. coli genetic map.

摘要

大肠杆菌(Es. coli)的Fis蛋白(倒位刺激因子)通过与重组增强子结合,刺激噬菌体Mu中G片段的位点特异性DNA倒位。利用从氨基末端氨基酸序列推导出来的合成寡核苷酸,我们克隆了编码这种特异性DNA结合蛋白的基因(称为fis)。DNA序列表明,Fis蛋白呈碱性,含有98个氨基酸。许多DNA结合蛋白特有的螺旋-转角-螺旋序列基序位于该蛋白的羧基末端。通过标记交换,我们构建了fis的插入突变体。Fis对大肠杆菌生长并非必需;然而,在fis突变体中未检测到Mu原噬菌体G片段的倒位。fis基因位于大肠杆菌遗传图谱上71至72分钟之间。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e37d/280402/6f9858d45c12/pnas00264-0133-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e37d/280402/8d79c955c773/pnas00264-0132-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e37d/280402/6f9858d45c12/pnas00264-0133-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e37d/280402/8d79c955c773/pnas00264-0132-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e37d/280402/6f9858d45c12/pnas00264-0133-a.jpg

相似文献

1
Escherichia coli host factor for site-specific DNA inversion: cloning and characterization of the fis gene.大肠杆菌位点特异性DNA倒位的宿主因子:fis基因的克隆与特性分析
Proc Natl Acad Sci U S A. 1988 Jun;85(12):4237-41. doi: 10.1073/pnas.85.12.4237.
2
The N-terminal part of the E.coli DNA binding protein FIS is essential for stimulating site-specific DNA inversion but is not required for specific DNA binding.大肠杆菌DNA结合蛋白FIS的N端部分对于刺激位点特异性DNA倒位至关重要,但对于特异性DNA结合并非必需。
Nucleic Acids Res. 1991 Nov 11;19(21):5915-22. doi: 10.1093/nar/19.21.5915.
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Sequence, regulation, and functions of fis in Salmonella typhimurium.鼠伤寒沙门氏菌中fis的序列、调控及功能
J Bacteriol. 1995 Apr;177(8):2021-32. doi: 10.1128/jb.177.8.2021-2032.1995.
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The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.野生型和突变型Fis蛋白的分子结构:突变变化与重组增强子功能或DNA结合之间的关系。
Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9558-62. doi: 10.1073/pnas.88.21.9558.
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Isolation of the gene encoding the Hin recombinational enhancer binding protein.编码Hin重组增强子结合蛋白的基因的分离
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The recombinational enhancer for DNA inversion functions independent of its orientation as a consequence of dyad symmetry in the Fis-DNA complex.DNA 倒位的重组增强子由于 Fis-DNA 复合物中的二元对称性而独立于其方向发挥作用。
Nucleic Acids Res. 1989 Aug 11;17(15):6043-53. doi: 10.1093/nar/17.15.6043.
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The Fis protein: it's not just for DNA inversion anymore.Fis蛋白:它不再仅仅用于DNA倒位了。
Mol Microbiol. 1992 Nov;6(22):3257-65. doi: 10.1111/j.1365-2958.1992.tb02193.x.
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Xis and Fis proteins prevent site-specific DNA inversion in lysogens of phage HK022.Xis和Fis蛋白可阻止噬菌体HK022溶原菌中位点特异性DNA倒位。
J Bacteriol. 1993 Feb;175(3):693-700. doi: 10.1128/jb.175.3.693-700.1993.
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The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coli.FIS蛋白可结合并使大肠杆菌染色体DNA复制起点oriC弯曲。
Nucleic Acids Res. 1991 Aug 11;19(15):4167-72. doi: 10.1093/nar/19.15.4167.
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Stimulation of DNA inversion by FIS: evidence for enhancer-independent contacts with the Gin-gix complex.FIS对DNA倒位的刺激作用:与Gin-gix复合物形成不依赖增强子的接触的证据。
Nucleic Acids Res. 1997 Oct 1;25(19):3832-9. doi: 10.1093/nar/25.19.3832.

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本文引用的文献

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Site-specific DNA inversion is enhanced by a DNA sequence element in cis.顺式 DNA 序列元件增强了特定部位的 DNA 反转。
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Linkage map of Escherichia coli K-12, edition 7.大肠杆菌K-12连锁图谱,第7版。
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Site-specific DNA Inversion by Serine Recombinases.丝氨酸重组酶介导的位点特异性DNA倒位
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The Fis protein has a stimulating role in initiation of replication in Escherichia coli in vivo.Fis蛋白在体内对大肠杆菌复制的起始具有刺激作用。
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RNase III is required for localization to the nucleoid of the 5' pre-rRNA leader and for optimal induction of rRNA synthesis in E. coli.RNase III 对于 5' 前 rRNA 引导序列定位于核区以及在大肠杆菌中 rRNA 合成的最佳诱导是必需的。
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Robust translation of the nucleoid protein Fis requires a remote upstream AU element and is enhanced by RNA secondary structure.核蛋白 Fis 的稳健翻译需要一个远程上游 AU 元件,并受 RNA 二级结构增强。
J Bacteriol. 2012 May;194(10):2458-69. doi: 10.1128/JB.00053-12. Epub 2012 Mar 2.
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Silencing of toxic gene expression by Fis.Fis 沉默毒性基因的表达。
Nucleic Acids Res. 2012 May;40(10):4358-67. doi: 10.1093/nar/gks037. Epub 2012 Jan 28.
9
Biochemical identification of base and phosphate contacts between Fis and a high-affinity DNA binding site.Fis与高亲和力DNA结合位点之间碱基和磷酸接触的生化鉴定。
J Mol Biol. 2008 Jul 4;380(2):327-39. doi: 10.1016/j.jmb.2008.04.075. Epub 2008 May 7.
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Cluster of DnaA boxes involved in regulation of Streptomyces chromosome replication: from in silico to in vivo studies.参与链霉菌染色体复制调控的DnaA框簇:从计算机模拟到体内研究
J Bacteriol. 2006 Sep;188(17):6184-94. doi: 10.1128/JB.00528-06.
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Genetic switches by DNA inversions in prokaryotes.原核生物中通过DNA倒位实现的基因开关
Biochim Biophys Acta. 1984 Jun 16;782(2):111-9. doi: 10.1016/0167-4781(84)90013-7.
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Invertible DNA determines host specificity of bacteriophage mu.可反转DNA决定了噬菌体μ的宿主特异性。
Nature. 1980 Jul 17;286(5770):218-22. doi: 10.1038/286218a0.
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Protein-DNA recognition.蛋白质-脱氧核糖核酸识别
Annu Rev Biochem. 1984;53:293-321. doi: 10.1146/annurev.bi.53.070184.001453.
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E. coli integration host factor binds to specific sites in DNA.大肠杆菌整合宿主因子与DNA中的特定位点结合。
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Protein-blotting on Polybrene-coated glass-fiber sheets. A basis for acid hydrolysis and gas-phase sequencing of picomole quantities of protein previously separated on sodium dodecyl sulfate/polyacrylamide gel.在聚凝胺包被的玻璃纤维片上进行蛋白质印迹。这是对先前在十二烷基硫酸钠/聚丙烯酰胺凝胶上分离的皮摩尔量蛋白质进行酸水解和气相测序的基础。
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Systematic method for the detection of potential lambda Cro-like DNA-binding regions in proteins.检测蛋白质中潜在的类λ Cro DNA 结合区域的系统方法。
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