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腔肠动物珊瑚拟海葵和 Discosoma sp. 的基因组草案

Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp.

机构信息

Biological and Environmental Sciences & Engineering Division (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.

Centre Scientifique de Monaco, Monaco, Monaco.

出版信息

Mol Ecol Resour. 2017 Nov;17(6):e187-e195. doi: 10.1111/1755-0998.12680. Epub 2017 Jun 27.

DOI:10.1111/1755-0998.12680
PMID:28407448
Abstract

Corallimorpharia are the closest noncalcifying relatives of reef-building corals. Aside from their popularity among aquarium hobbyists, their evolutionary position between the Actiniaria (sea anemones) and the Scleractinia (hard corals) makes them ideal candidates for comparative studies aiming at understanding the evolution of hexacorallian orders in general and reef-building corals in particular. Here we have sequenced and assembled two draft genomes for the Corallimorpharia species Amplexidiscus fenestrafer and Discosoma sp. The draft genomes encompass 370 and 445 Mbp, respectively, and encode for 21,372 and 23,199 genes. To facilitate future studies using these resources, we provide annotations for the predicted gene models-not only at gene level, by annotating gene models with the function of the best-matching homologue, and GO terms when available; but also at protein domain level, where gene function can be better verified through the conservation of the sequence and order of protein domains. Further, we provide an online platform (http://corallimorpharia.reefgenomics.org), which includes a blast interface and a genome browser to facilitate the use of these resources. We believe that these two genomes are important resources for future studies on hexacorallian systematics and the evolutionary basis of their specific traits such as the symbiotic relationship with dinoflagellates of the genus Symbiodinium or the evolution of calcification in reef-building corals.

摘要

珊瑚虫目是与造礁珊瑚关系最近的非钙化近亲。除了在水族馆爱好者中广受欢迎之外,它们在 Actiniaria(海葵)和 Scleractinia(硬珊瑚)之间的进化位置使它们成为比较研究的理想候选者,旨在了解六放珊瑚目一般和造礁珊瑚的进化。在这里,我们为珊瑚虫目的 Amplexidiscus fenestrafer 和 Discosoma sp. 两个物种测序并组装了两个基因组草图。这两个基因组草图分别包含 370 和 445 Mbp,分别编码 21372 和 23199 个基因。为了便于将来使用这些资源进行研究,我们提供了预测基因模型的注释-不仅在基因水平上,通过将基因模型与最佳匹配同源物的功能以及可用的 GO 术语进行注释;而且在蛋白质结构域水平上,通过序列和蛋白质结构域顺序的保守性,可以更好地验证基因功能。此外,我们提供了一个在线平台(http://corallimorpharia.reefgenomics.org),其中包括一个 Blast 接口和一个基因组浏览器,以方便使用这些资源。我们认为这两个基因组是未来六放珊瑚系统学和它们特定特征(例如与共生鞭毛藻属 Symbiodinium 的共生关系或造礁珊瑚钙化的进化)进化基础研究的重要资源。

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