2014年从海地人血浆样本中分离出的基孔肯雅病毒的全基因组序列
Complete Genome Sequences of Chikungunya Viruses Isolated from Plasma Specimens Collected from Haitians in 2014.
作者信息
White Sarah K, Morris J Glenn, Elbadry Maha A, Beau De Rochars Valery Madsen, Okech Bernard A, Lednicky John A
机构信息
Department of Environmental and Global Health, College of Public Health and Health Professions, University of Florida, Gainesville, Florida, USA.
Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA.
出版信息
Genome Announc. 2017 Apr 13;5(15):e00148-17. doi: 10.1128/genomeA.00148-17.
Abstract
Ten chikungunya virus isolates from human plasma collected in Haiti from May to August 2014, in the midst of a chikungunya fever outbreak, were fully sequenced. The resulting genomic sequences are nearly identical, and phylogenetic analyses indicate they belong to the Asian lineage of the virus.
摘要
对2014年5月至8月在海地基孔肯雅热疫情期间从人类血浆中分离出的10株基孔肯雅病毒进行了全基因组测序。所得的基因组序列几乎相同，系统发育分析表明它们属于该病毒的亚洲谱系。
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5
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6
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