Coleman R A, Qiao Z, Singh S K, Peng C S, Cianfrocco M, Zhang Z, Piasecka A, Aldeborgh H, Basishvili G, Liu W L
Gruss Lipper Biophotonics Center, Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, New York, USA
Gruss Lipper Biophotonics Center, Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, New York, USA.
Mol Cell Biol. 2017 Jun 15;37(13). doi: 10.1128/MCB.00085-17. Print 2017 Jul 1.
p53 is a central regulator that turns on vast gene networks to maintain cellular integrity in the presence of various stimuli. p53 activates transcription initiation in part by aiding recruitment of TFIID to the promoter. However, the precise means by which p53 dynamically interacts with TFIID to facilitate assembly on target gene promoters remains elusive. To address this key issue, we have undertaken an integrated approach involving single-molecule fluorescence microscopy, single-particle cryo-electron microscopy, and biochemistry. Our real-time single-molecule imaging data demonstrate that TFIID alone binds poorly to native p53 target promoters. p53 unlocks TFIID's ability to bind DNA by stabilizing TFIID contacts with both the core promoter and a region within p53's response element. Analysis of single-molecule dissociation kinetics reveals that TFIID interacts with promoters via transient and prolonged DNA binding modes that are each regulated by p53. Importantly, our structural work reveals that TFIID's conversion to a rearranged DNA binding conformation is enhanced in the presence of DNA and p53. Notably, TFIID's interaction with DNA induces p53 to rapidly dissociate, which likely leads to additional rounds of p53-mediated recruitment of other basal factors. Collectively, these findings indicate that p53 dynamically escorts and loads TFIID onto its target promoters.
p53是一种核心调节因子,在存在各种刺激的情况下,它会开启大量基因网络以维持细胞完整性。p53部分通过协助将TFIID招募到启动子上来激活转录起始。然而,p53与TFIID动态相互作用以促进在靶基因启动子上组装的确切方式仍然难以捉摸。为了解决这个关键问题,我们采用了一种综合方法,包括单分子荧光显微镜、单颗粒冷冻电子显微镜和生物化学。我们的实时单分子成像数据表明,单独的TFIID与天然p53靶启动子结合不佳。p53通过稳定TFIID与核心启动子以及p53反应元件内一个区域的接触来释放TFIID结合DNA的能力。对单分子解离动力学的分析表明,TFIID通过瞬时和延长的DNA结合模式与启动子相互作用,每种模式都受p53调节。重要的是,我们的结构研究表明,在存在DNA和p53的情况下,TFIID向重排的DNA结合构象的转变会增强。值得注意的是,TFIID与DNA的相互作用会诱导p53迅速解离,这可能会导致p53介导的其他基础因子的额外轮次招募。总的来说,这些发现表明p53动态护送并将TFIID加载到其靶启动子上。