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Systems biology guided by XCMS Online metabolomics.由XCMS在线代谢组学引导的系统生物学。
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Metabolomics Data Processing Using XCMS.使用 XCMS 进行代谢组学数据处理。
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Integrated Analysis of the Effects of Cecal Microbiota and Serum Metabolome on Market Weights of Chinese Native Chickens.盲肠微生物群和血清代谢组对中国本土鸡上市体重影响的综合分析
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本文引用的文献

1
Galaxy-M: a Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data.Galaxy-M：一种用于处理和分析基于直接进样和液相色谱质谱联用的代谢组学数据的Galaxy工作流程。
Gigascience. 2016 Feb 23;5:10. doi: 10.1186/s13742-016-0115-8. eCollection 2016.
2
MetaboAnalyst 3.0--making metabolomics more meaningful.MetaboAnalyst 3.0——让代谢组学更具意义。
Nucleic Acids Res. 2015 Jul 1;43(W1):W251-7. doi: 10.1093/nar/gkv380. Epub 2015 Apr 20.
3
Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry.大规模计算质谱中自动化下游数据分析与可视化的工作流程。
Proteomics. 2015 Apr;15(8):1443-7. doi: 10.1002/pmic.201400391. Epub 2015 Feb 14.
4
Autonomous metabolomics for rapid metabolite identification in global profiling.用于全局分析中快速代谢物鉴定的自主代谢组学。
Anal Chem. 2015 Jan 20;87(2):884-91. doi: 10.1021/ac5025649. Epub 2014 Dec 26.
5
UniProt: a hub for protein information.通用蛋白质数据库（UniProt）：蛋白质信息中心。
Nucleic Acids Res. 2015 Jan;43(Database issue):D204-12. doi: 10.1093/nar/gku989. Epub 2014 Oct 27.
6
Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses.交互式XCMS在线平台：简化高级代谢组学数据处理及后续统计分析
Anal Chem. 2014 Jul 15;86(14):6931-9. doi: 10.1021/ac500734c. Epub 2014 Jun 25.
7
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.MetaCyc 数据库包含代谢途径和酶，以及 BioCyc 集合的途径/基因组数据库。
Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12.
8
Engineering a more thermostable blue light photo receptor Bacillus subtilis YtvA LOV domain by a computer aided rational design method.通过计算机辅助理性设计方法工程改造更耐热的蓝光光受体枯草芽孢杆菌 YtvA LOV 结构域。
PLoS Comput Biol. 2013;9(7):e1003129. doi: 10.1371/journal.pcbi.1003129. Epub 2013 Jul 4.
9
XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification.XCMS：使用非线性峰对齐、匹配和鉴定处理代谢物谱分析的质谱数据。
Anal Chem. 2006 Feb 1;78(3):779-87. doi: 10.1021/ac051437y.

Systems biology guided by XCMS Online metabolomics.

作者信息

Huan Tao, Forsberg Erica M, Rinehart Duane, Johnson Caroline H, Ivanisevic Julijana, Benton H Paul, Fang Mingliang, Aisporna Aries, Hilmers Brian, Poole Farris L, Thorgersen Michael P, Adams Michael W W, Krantz Gregory, Fields Matthew W, Robbins Paul D, Niedernhofer Laura J, Ideker Trey, Majumder Erica L, Wall Judy D, Rattray Nicholas J W, Goodacre Royston, Lairson Luke L, Siuzdak Gary

机构信息

Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, California, USA.

Yale School of Public Health, Yale University, New Haven, Connecticut, USA.

出版信息

Nat Methods. 2017 Apr 27;14(5):461-462. doi: 10.1038/nmeth.4260.

DOI:10.1038/nmeth.4260
PMID:28448069
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5933448/
Abstract
摘要