Stappler Eva, Dattenböck Christoph, Tisch Doris, Schmoll Monika
Center for Health and Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria.
TU Wien, Insitute of Chemical Engineering, Research Area Molecular Biotechnology, Vienna, Austria.
mSphere. 2017 May 10;2(3). doi: 10.1128/mSphere.00089-17. eCollection 2017 May-Jun.
In fungi, most metabolic processes are subject to regulation by light. is adapted to degradation of plant cell walls and regulates production of the required enzymes in a manner dependent on the nutrient source and the light status. Here we investigated the interrelated relevance of two regulation levels of the transcriptome of : light regulation and carbon source-dependent control. We show that the carbon source (cellulose, lactose, sophorose, glucose, or glycerol) is the major source of variation, with light having a modulating effect on transcript regulation. A total of 907 genes were regulated under cellulase-inducing conditions in light, and 947 genes were regulated in darkness, with 530 genes overlapping (1,324 in total). Only 218 of the 1,324 induction-specific genes were independent of light and not regulated by the BLR1, BLR2, and ENV1 photoreceptors. Analysis of the genomic distribution of genes regulated by light upon growth on cellulose revealed considerable overlap of light-regulated clusters with induction-specific clusters and carbohydrate-active enzyme (CAZyme) clusters. Further, we found evidence for the operation of a sensing mechanism for solid cellulosic substrates, with regulation of genes such as , , and or of genes encoding hydrophobins which is related to the cyclic AMP (cAMP)-dependent regulatory output of ENV1. We identified class XIII G-protein-coupled receptors (GPCRs) CSG1 and CSG2 in as putative cellulose/glucose-sensing GPCRs. Our data indicate that the cellulase regulation pathway is bipartite, comprising a section corresponding to transcriptional regulation and one corresponding to posttranscriptional regulation, with the two connected by the function of CSG1. In fungi, most metabolic processes are subject to regulation by light. For , light-dependent regulation of cellulase gene expression is specifically shown. Therefore, we intended to unravel the relationship between regulation of enzymes by the carbon source and regulation of enzymes by light. Our two-dimensional analysis included inducing and repressing carbon sources which we used to compare light-specific regulation to dark-specific regulation and to rule out effects specific for a single carbon source. We found close connections with respect to gene regulation as well as significant differences in dealing with carbon in the environment in light and darkness. Moreover, our analyses showed an intricate regulation mechanism for substrate degradation potentially involving surface sensing and provide a basis for knowledge-based screening for strain improvement.
在真菌中,大多数代谢过程都受到光的调节。它适应植物细胞壁的降解,并根据营养源和光照状态调节所需酶的产生。在这里,我们研究了转录组两个调控水平的相互关联:光调节和碳源依赖性控制。我们表明,碳源(纤维素、乳糖、槐糖、葡萄糖或甘油)是变异的主要来源,光对转录调控具有调节作用。在纤维素酶诱导条件下,共有907个基因在光照下受到调控,947个基因在黑暗中受到调控,其中530个基因重叠(总共1324个)。在这1324个诱导特异性基因中,只有218个基因独立于光,不受BLR1、BLR2和ENV1光感受器的调控。对在纤维素上生长时受光调控的基因的基因组分布分析表明,光调控簇与诱导特异性簇和碳水化合物活性酶(CAZyme)簇有相当大的重叠。此外,我们发现了一种针对固体纤维素底物的传感机制的运行证据,该机制对如、和等基因或与ENV1的环磷酸腺苷(cAMP)依赖性调控输出相关的疏水蛋白编码基因进行调控。我们在中鉴定出XIII类G蛋白偶联受体(GPCR)CSG1和CSG2作为假定的纤维素/葡萄糖传感GPCR。我们的数据表明,纤维素酶调控途径是二分的,包括一个对应于转录调控的部分和一个对应于转录后调控的部分,两者通过CSG1的功能连接。在真菌中,大多数代谢过程都受到光的调节。对于,特别显示了纤维素酶基因表达的光依赖性调节。因此,我们旨在阐明碳源对酶的调节与光对酶的调节之间的关系。我们的二维分析包括诱导和抑制碳源,我们用它们来比较光特异性调节与暗特异性调节,并排除单一碳源的特异性影响。我们发现了基因调控方面的密切联系,以及在光照和黑暗条件下处理环境中碳的显著差异。此外,我们的分析显示了一种可能涉及表面传感的底物降解复杂调控机制,并为基于知识的菌株改良筛选提供了基础。