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固氮酶 FeMo 辅因子的间隙碳比之前认为的更稳定。

The Interstitial Carbon of the Nitrogenase FeMo Cofactor is Far Better Stabilized than Previously Assumed.

机构信息

TU Braunschweig, Fakultät für Lebenswissenschaften, Institut für Organische Chemie, Abteilung Computerchemie, Hagenring 30, 38106, Braunschweig, Germany.

出版信息

Angew Chem Int Ed Engl. 2017 Jun 12;56(25):7288-7291. doi: 10.1002/anie.201701790. Epub 2017 May 19.

Abstract

The first quantum-mechanical calculations of all relevant potential constants in both the iron-molybdenum cofactor and the iron-vanadium cofactor of nitrogenase suggest that the carbide is bound to the center of the enzyme much more strongly than hitherto assumed. Previous studies seemed to indicate a dummy function of the interstitial carbon, with a weak force constant (ca. 0.32 N cm ). Our new investigations confirm a different picture: the central carbon atom binds the iron-sulfur cluster through six covalent C-Fe bonds. With a potential constant of more than 1.3 N cm , the interstitial carbon also appears to be dynamically persistent. According to our investigations, the values for the elasticity within the iron-sulfur cluster have to be corrected too. These new details on the mechano-chemical properties of the FeMo cofactor will be important for elucidating the catalytic cycle of nitrogen fixation. By implementing our new algorithm in the freely available COMPLIANCE program, the dependence on the coordinates during the calculation of Hesse matrices is eliminated completely.

摘要

铁-钼辅因子和固氮酶中铁-钒辅因子中所有相关势能常数的首次量子力学计算表明,碳化铁与酶的中心结合得比以往假设的要强得多。先前的研究似乎表明间隙碳具有较弱的力常数(约 0.32Ncm)的虚拟功能。我们的新研究证实了一个不同的图景:中心碳原子通过六个共价 C-Fe 键将铁-硫簇结合在一起。间隙碳的势能常数超过 1.3Ncm,也表现出动态持久性。根据我们的研究,铁-硫簇内的弹性值也需要修正。这些关于铁-钼辅因子机械化学性质的新细节对于阐明固氮催化循环将是重要的。通过在免费提供的 COMPLIANCE 程序中实现我们的新算法,完全消除了在计算海瑟矩阵过程中对坐标的依赖。

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