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猪笼草杂交研究中,、和×的全长转录组测序分析。

Iso-Seq analysis of , and  ×  for hybridisation study in pitcher plants.

作者信息

Zulkapli Muhammad Mu'izzuddin, Rosli Muhammad Aqil Fitri, Salleh Faris Imadi Mohd, Mohd Noor Normah, Aizat Wan Mohd, Goh Hoe-Han

机构信息

Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.

出版信息

Genom Data. 2017 May 3;12:130-131. doi: 10.1016/j.gdata.2017.05.003. eCollection 2017 Jun.

Abstract

Tropical pitcher plants in the species-rich Nepenthaceae family of carnivorous plants possess unique pitcher organs. Hybridisation, natural or artificial, in this family is extensive resulting in pitchers with diverse features. The pitcher functions as a passive insect trap with digestive fluid for nutrient acquisition in nitrogen-poor habitats. This organ shows specialisation according to the dietary habit of different Nepenthes species. In this study, we performed the first single-molecule real-time isoform sequencing (Iso-Seq) analysis of full-length cDNA from which can feed on leaf litter, compared to carnivorous , and their carnivorous hybrid  × . This allows the comparison of pitcher transcriptomes from the parents and the hybrid to understand how hybridisation could shape the evolution of dietary habit in Nepenthes. Raw reads have been deposited to SRA database with the accession numbers SRX2692198 (), SRX2692197 (), and SRX2692196 ( × ).

摘要

猪笼草属的热带猪笼草植物属于物种丰富的食虫植物猪笼草科,拥有独特的捕虫笼器官。在这个科中,自然杂交或人工杂交都很广泛,导致捕虫笼具有多样的特征。捕虫笼作为一个被动的昆虫陷阱,含有消化液,用于在氮含量低的栖息地获取营养。这个器官根据不同猪笼草物种的饮食习惯表现出特化。在本研究中,我们对可以以落叶为食的[具体物种1]、食肉的[具体物种2]及其食肉杂交种[具体物种1]×[具体物种2]的全长cDNA进行了首次单分子实时异构体测序(Iso-Seq)分析。这使得我们能够比较亲本和杂交种的捕虫笼转录组,以了解杂交如何塑造猪笼草属植物饮食习惯的进化。原始读数已存入SRA数据库,登录号分别为SRX2692198([具体物种1])、SRX2692197([具体物种2])和SRX2692196([具体物种1]×[具体物种2])。

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