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DRodVir:探索啮齿动物病毒组多样性的资源。

DRodVir: A resource for exploring the virome diversity in rodents.

机构信息

MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100176, China.

MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100176, China.

出版信息

J Genet Genomics. 2017 May 20;44(5):259-264. doi: 10.1016/j.jgg.2017.04.004. Epub 2017 May 3.

Abstract

Emerging zoonotic diseases have received tremendous interests in recent years, as they pose a significant threat to human health, animal welfare, and economic stability. A high proportion of zoonoses originate from wildlife reservoirs. Rodents are the most numerous, widespread, and diverse group of mammals on the earth and are reservoirs for many zoonotic viruses responsible for significant morbidity and mortality. A better understanding of virome diversity in rodents would be of importance for researchers and professionals in the field. Therefore, we developed the DRodVir database (http://www.mgc.ac.cn/DRodVir/), a comprehensive, up-to-date, and well-curated repository of rodent-associated animal viruses. The database currently covers 7690 sequences from 5491 rodent-associated mammal viruses of 26 viral families detected from 194 rodent species in 93 countries worldwide. In addition to virus sequences, the database provides detailed information on related samples and host rodents, as well as a set of online analytical tools for text query, BLAST search and phylogenetic reconstruction. The DRodVir database will help virologists better understand the virome diversity of rodents. Moreover, it will be a valuable tool for epidemiologists and zoologists for easy monitoring and tracking of the current and future zoonotic diseases. As a data application example, we further compared the current status of rodent-associated viruses with bat-associated viruses to highlight the necessity for including additional host species and geographic regions in future investigations, which will help us achieve a better understanding of the virome diversities in the two major reservoirs of emerging zoonotic infectious diseases.

摘要

近年来,新兴人畜共患疾病受到了极大关注,因为它们对人类健康、动物福利和经济稳定构成了重大威胁。很大一部分人畜共患病起源于野生动物宿主。啮齿动物是地球上数量最多、分布最广、种类最多的哺乳动物,是许多导致重大发病率和死亡率的人畜共患病毒的宿主。更好地了解啮齿动物病毒组的多样性对于研究人员和该领域的专业人员来说非常重要。因此,我们开发了 DRodVir 数据库(http://www.mgc.ac.cn/DRodVir/),这是一个全面、最新且精心整理的啮齿动物相关动物病毒资源库。该数据库目前涵盖了 7690 个序列,这些序列来自全球 93 个国家的 194 种啮齿动物中检测到的 5491 种与啮齿动物相关的哺乳动物病毒,这些病毒属于 26 种病毒科。除了病毒序列,该数据库还提供了有关相关样本和宿主啮齿动物的详细信息,以及一套用于文本查询、BLAST 搜索和系统发育重建的在线分析工具。DRodVir 数据库将帮助病毒学家更好地了解啮齿动物病毒组的多样性。此外,它将成为流行病学家和动物学家的宝贵工具,用于轻松监测和跟踪当前和未来的人畜共患疾病。作为一个数据应用示例,我们进一步比较了啮齿动物相关病毒和蝙蝠相关病毒的现状,强调了在未来的研究中需要包括其他宿主物种和地理区域的必要性,这将有助于我们更好地了解新兴人畜共患传染病的两个主要宿主的病毒组多样性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d99/7105198/ee533c9aeca1/gr1_lrg.jpg

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