Sarkar Debabrata, Mahato Ajay Kumar, Satya Pratik, Kundu Avijit, Singh Sangeeta, Jayaswal Pawan Kumar, Singh Akshay, Bahadur Kaushlendra, Pattnaik Sasmita, Singh Nisha, Chakraborty Avrajit, Mandal Nur Alam, Das Debajeet, Basu Tista, Sevanthi Amitha Mithra, Saha Dipnarayan, Datta Subhojit, Kar Chandan Sourav, Mitra Jiban, Datta Karabi, Karmakar Pran Gobinda, Sharma Tilak Raj, Mohapatra Trilochan, Singh Nagendra Kumar
ICAR-Central Research Institute for Jute and Allied Fibres (CRIJAF), Nilganj, Barrackpore, Kolkata 700120, West Bengal, India.
ICAR-National Research Centre on Plant Biotechnology (NRCPB), IARI, Pusa Campus, New Delhi 110012, India.
Genom Data. 2017 May 7;12:151-154. doi: 10.1016/j.gdata.2017.05.007. eCollection 2017 Jun.
Here, we present the draft genome (377.3 Mbp) of cv. JRO-524 (Navin), which is a leading dark jute variety developed from a cross between African (cv. Sudan Green) and indigenous (cv. JRO-632) types. We predicted from the draft genome a total of 57,087 protein-coding genes with annotated functions. We identified a large number of 1765 disease resistance-like and defense response genes in the jute genome. The annotated genes showed the highest sequence similarities with that of followed by . Seven chromosome-scale genetically anchored pseudomolecules were constructed with a total size of 8.53 Mbp and used for synteny analyses with the cocoa and cotton genomes. Like other plant species, and retrotransposons were the most abundant classes of repeat elements in jute. The raw data of our study are available in SRA database of NCBI with accession number SRX1506532. The genome sequence has been deposited at DDBJ/EMBL/GenBank under the accession LLWS00000000, and the version described in this paper will be the first version (LLWS01000000).
在此，我们展示了cv. JRO - 524（Navin）的基因组草图（377.3兆碱基对），它是一个主要的深色黄麻品种，由非洲品种（cv. Sudan Green）和本土品种（cv. JRO - 632）杂交培育而成。我们从基因组草图中预测出总共57,087个具有注释功能的蛋白质编码基因。我们在黄麻基因组中鉴定出大量1765个抗病样和防御反应基因。注释基因与……的序列相似性最高，其次是……。构建了7个染色体规模的遗传锚定假分子，总大小为8.53兆碱基对，并用于与可可和棉花基因组的共线性分析。与其他植物物种一样，……和……反转录转座子是黄麻中最丰富的重复元件类别。我们研究的原始数据可在NCBI的SRA数据库中获取，登录号为SRX1506532。基因组序列已保存在DDBJ/EMBL/GenBank中，登录号为LLWS00000000，本文描述的版本将是第一个版本（LLWS01000000）。
