Liu Yang, Lai Qiliang, Shao Zongze
School of Municipal and Environmental Engineering, Harbin Institute of Technology, Harbin 150090, PR China.
State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, SOA; Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, PR China.
Int J Syst Evol Microbiol. 2017 Jul;67(7):2109-2113. doi: 10.1099/ijsem.0.001844. Epub 2017 Jun 9.
A bacterial strain, designated 25B10_4T, was isolated from surface seawater of the Bering Sea and characterized using a polyphasic taxonomic approach. Cells of strain 25B10_4T were Gram-stain-negative, motile and short-rod-shaped. Growth was observed at 10-43 °C (optimum 28 °C), at pH 6-9 (optimum pH 7) and with 0-12 % NaCl (optimum 3-4 %, w/v). Phylogenetic analyses based on 16S rRNA gene sequences showed that strain 25B10_4T formed an independent branch within the genus Thioclava, sharing high similarities with four related type strains, Thioclava atlantica 13D2W-2T (98.9 %), Thioclava pacifica TL 2T (98.5 %), Thioclava dalianensis DLFJ1-1T (98.4 %) and Thioclava indica DT23-4T (96.9 %), and low similarities (less than 96.5 %) with other type strains within the family Rhodobacteraceae. The major fatty acid was identified as summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c). The quinone was Q-10. The polar lipids comprised phosphatidylethanolamine, phosphatidylglycerol, glycolipid and five unidentified phospholipids. The DNA G+C content was 63.8 mol%. The digital DNA-DNA hybridization and average nucleotide identity values between strain 25B10_4T and the four above-mentioned type strains were, respectively, 20.5-25.7 % and 77.8-82.4 %. The phenotypic, phylogenetic and chemotaxonomic analyses clearly indicated that strain 25B10_4T represents a novel species within the genus Thioclava, for which the name Thioclava nitratireducens sp. nov. is proposed. The type strain is 25B10_4T (=MCCC 1A07302T=LMG 29614T).
从白令海表层海水中分离出一株细菌,命名为25B10_4T,并采用多相分类方法对其进行了特征描述。25B10_4T菌株的细胞革兰氏染色阴性,具运动性,呈短杆状。在10-43 °C(最适温度28 °C)、pH 6-9(最适pH 7)和0-12 % NaCl(最适3-4 %,w/v)条件下可生长。基于16S rRNA基因序列的系统发育分析表明,25B10_4T菌株在硫棒菌属内形成一个独立分支,与四株相关模式菌株,即大西洋硫棒菌13D2W-2T(98.9 %)、太平洋硫棒菌TL 2T(98.5 %)、大连硫棒菌DLFJ1-1T(98.4 %)和印度硫棒菌DT23-4T(96.9 %)具有高度相似性,与红杆菌科内的其他模式菌株相似度较低(低于96.5 %)。主要脂肪酸被鉴定为总和特征8(C18 : 1ω6c和/或C18 : 1ω7c)。醌类为Q-10。极性脂质包括磷脂酰乙醇胺、磷脂酰甘油、糖脂和五种未鉴定的磷脂。DNA G+C含量为63.8 mol%。25B10_4T菌株与上述四株模式菌株之间的数字DNA-DNA杂交值和平均核苷酸同一性值分别为20.5-25.7 % 和77.8-82.4 %。表型、系统发育和化学分类分析清楚地表明,25B10_4T菌株代表硫棒菌属内的一个新物种,为此提出新名称嗜硝酸盐还原硫棒菌(Thioclava nitratireducens sp. nov.)。模式菌株为25B10_4T(=MCCC 1A07302T=LMG 29614T)。