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用于解剖病理学中 DICOM 全幻灯片图像可视化的最佳网络查看器应用程序。

Optimum web viewer application for DICOM whole slide image visualization in anatomical pathology.

机构信息

VISILAB, University of Castilla-La Mancha, Ciudad Real, Spain.

VISILAB, University of Castilla-La Mancha, Ciudad Real, Spain.

出版信息

Comput Methods Programs Biomed. 2019 Oct;179:104983. doi: 10.1016/j.cmpb.2019.104983. Epub 2019 Jul 12.

Abstract

BACKGROUND AND OBJECTIVE

Digital scanners are being increasingly adopt-ed in anatomical pathology, but there is still a lack of a standardized whole slide image (WSI) format. This translates into the need for interoperability and knowledge representation for shareable and computable clinical information. This work describes a robust solution, called Visilab Viewer, able to interact and work with any WSI based on the DICOM standard.

METHODS

Visilab Viewer is a web platform developed and integrated alongside a proposed web architecture following the DICOM definition. To prepare the information of the pyramid structure proposed in DICOM, a specific module was defined. The same structure is used by a second module that aggregates on the cache browser the adjacent tiles or frames of the current user's viewport with the aim of achieving fast and fluid navigation over the tissue slide. This solution was tested and compared with three different web viewers, publicly available, with 10 WSIs.

RESULTS

A quantitative assessment was performed based on the average load time per frame together with the number of fully loaded frames. Kruskal-Wallis and Dunn tests were used to compare each web viewer latency results and finally to rank them. Additionally, a qualitative evaluation was done by 6 pathologists based on speed and quality for zooming, panning and usability. The proposed viewer obtained the best performance in both assessments. The entire architecture proposed was tested in the 2nd worldwide DICOM Connectathon, obtaining successful results with all participant scanner vendors.

CONCLUSIONS

The online tool allows users to navigate and obtain a correct visualization of the samples avoiding any restriction of format and localization. The two strategical modules allow to reduce time in displaying the slide and therefore, offer high fluidity and usability. The web platform manages not only the visualization with the developed web viewer but also includes the insertion, manipulation and generation of new DICOM elements. Visilab Viewer can successfully exchange DICOM data. Connectathons are the ultimate interoperability tests and are therefore required to guarantee that solutions as Visilab Viewer and its architecture can successfully exchange data following the DICOM standard. Accompanying demo video. (Link to Youtube video.).

摘要

背景与目的

数字扫描仪在解剖病理学中越来越受欢迎,但仍然缺乏标准化的全幻灯片图像 (WSI) 格式。这需要可互操作和可表示的知识,以实现可共享和可计算的临床信息。这项工作描述了一个强大的解决方案,称为 Visilab Viewer,它能够与基于 DICOM 标准的任何 WSI 进行交互和协作。

方法

Visilab Viewer 是一个网络平台,它是根据 DICOM 定义开发和集成的,同时还提出了一个网络架构。为了准备 DICOM 中提出的金字塔结构的信息,定义了一个特定的模块。第二个模块使用相同的结构,它在缓存浏览器中聚合当前用户视口的相邻瓦片或帧,以实现对组织切片的快速流畅导航。该解决方案经过测试,并与三个不同的网络查看器进行了比较,这些查看器是公开可用的,共有 10 个 WSI。

结果

根据每个框架的平均加载时间以及完全加载的框架数量,进行了定量评估。使用 Kruskal-Wallis 和 Dunn 检验来比较每个网络查看器的延迟结果,并最终对其进行排序。此外,由 6 名病理学家对缩放、平移和可用性的速度和质量进行了定性评估。提出的查看器在这两个评估中都取得了最好的性能。所提出的整个架构在第二次全球 DICOM 连接测试中进行了测试,与所有参与的扫描仪供应商都取得了成功的结果。

结论

该在线工具允许用户浏览并正确显示样本,避免格式和位置的任何限制。两个策略性模块允许减少显示幻灯片的时间,因此提供了高流畅性和可用性。网络平台不仅管理使用开发的网络查看器进行的可视化,还包括插入、操作和生成新的 DICOM 元素。Visilab Viewer 可以成功地交换 DICOM 数据。连接测试是最终的互操作性测试,因此需要保证像 Visilab Viewer 及其架构这样的解决方案能够成功地按照 DICOM 标准交换数据。随附演示视频。(链接至 YouTube 视频)。

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