Chemistry Department, Texas A&M University , 3255 TAMU, College Station, Texas 77843, United States.
J Phys Chem B. 2017 Jul 13;121(27):6492-6498. doi: 10.1021/acs.jpcb.7b03052. Epub 2017 Jun 29.
Water-protein interactions play a central role in protein structure, dynamics, and function. These interactions, traditionally, have been studied using nuclear magnetic resonance (NMR) by measuring chemical exchange and nuclear Overhauser effect (NOE). Polarization transferred from hyperpolarized water can result in substantial transient signal enhancements of protein resonances due to these processes. Here, we use dissolution dynamic nuclear polarization and flow-NMR for measuring the pH dependence of transferred signals to the protein trypsin. A maximum enhancement of 20 is visible in the amide proton region of the spectrum at pH 6.0, and of 47 at pH 7.5. The aliphatic region is enhanced up to 2.3 times at pH 6.0 and up to 2.5 times at pH 7.5. The time dependence of these observed signals can be modeled quantitatively using rate equations incorporating chemical exchange to amide sites and, optionally, intramolecular NOE to aliphatic protons. On the basis of these two- and three-site models, average exchange (k) and cross-relaxation rates (σ) obtained were k = 12 s, σ = -0.33 s for pH 7.5 and k = 1.8 s, σ = -0.72 s for pH 6.0 at a temperature of 304 K. These values were validated using conventional EXSY and NOESY measurements. In general, a rapid measurement of exchange and cross-relaxation rates may be of interest for the study of structural changes of the protein occurring on the same time scale. Besides protein-water interactions, interactions with cosolvent or solutes can further be investigated using the same methods.
水-蛋白质相互作用在蛋白质结构、动力学和功能中起着核心作用。这些相互作用传统上是通过测量化学交换和核奥弗豪瑟效应 (NOE) 来使用核磁共振 (NMR) 进行研究的。由于这些过程,来自超极化水的极化转移可以导致蛋白质共振的瞬时信号增强。在这里,我们使用溶解动态核极化和流动 NMR 来测量转移信号到蛋白质胰蛋白酶的 pH 依赖性。在 pH 值为 6.0 时,在谱的酰胺质子区域可见最大增强 20,在 pH 值为 7.5 时增强 47。在 pH 值为 6.0 时,脂肪族区域增强高达 2.3 倍,在 pH 值为 7.5 时增强高达 2.5 倍。这些观察到的信号的时间依赖性可以使用包含化学交换到酰胺位点的速率方程和可选的分子内 NOE 到脂肪族质子的速率方程进行定量建模。基于这两个和三个位点模型,在 304 K 的温度下,对于 pH 值为 7.5,获得的平均交换 (k) 和交叉弛豫速率 (σ) 分别为 k = 12 s,σ = -0.33 s,对于 pH 值为 6.0,k = 1.8 s,σ = -0.72 s。这些值使用传统的 EXSY 和 NOESY 测量进行了验证。一般来说,快速测量交换和交叉弛豫速率可能对研究在相同时间尺度上发生的蛋白质结构变化感兴趣。除了蛋白质-水相互作用外,还可以使用相同的方法进一步研究与共溶剂或溶质的相互作用。