Fisicaro Giuseppe, Genovese Luigi, Andreussi Oliviero, Mandal Sagarmoy, Nair Nisanth N, Marzari Nicola, Goedecker Stefan
Department of Physics, University of Basel , Klingelbergstrasse 82, CH-4056 Basel, Switzerland.
Laboratoire de simulation atomistique (L_Sim), SP2M, INAC, CEA-UJF , F-38054 Grenoble, France.
J Chem Theory Comput. 2017 Aug 8;13(8):3829-3845. doi: 10.1021/acs.jctc.7b00375. Epub 2017 Jul 3.
We present an implicit solvation approach where the interface between the quantum-mechanical solute and the surrounding environment is described by a fully continuous permittivity built up with atomic-centered "soft" spheres. This approach combines many of the advantages of the self-consistent continuum solvation model in handling solutes and surfaces in contact with complex dielectric environments or electrolytes in electronic-structure calculations. In addition it is able to describe accurately both neutral and charged systems. The continuous function, describing the variation of the permittivity, allows to compute analytically the nonelectrostatic contributions to the solvation free energy that are described in terms of the quantum surface. The whole methodology is computationally stable, provides consistent energies and forces, and keeps the computational efforts and runtimes comparable to those of standard vacuum calculations. The capabilitiy to treat arbitrary molecular or slab-like geometries as well as charged molecules is key to tackle electrolytes within mixed explicit/implicit frameworks. We show that, with given, fixed atomic radii, two parameters are sufficient to give a mean absolute error of only 1.12 kcal/mol with respect to the experimental aqueous solvation energies for a set of 274 neutral solutes. For charged systems, the same set of parameters provides solvation energies for a set of 60 anions and 52 cations with an error of 2.96 and 2.13 kcal/mol, respectively, improving upon previous literature values. To tackle elements not present in most solvation databases, a new benchmark scheme on wettability and contact angles is proposed for solid-liquid interfaces and applied to the investigation of the stable terminations of a CdS (112̅0) surface in an electrochemical medium.
我们提出了一种隐式溶剂化方法,其中量子力学溶质与周围环境之间的界面由以原子为中心的“软”球构建的完全连续介电常数来描述。这种方法结合了自洽连续介质溶剂化模型在处理电子结构计算中与复杂介电环境或电解质接触的溶质和表面时的许多优点。此外,它能够准确描述中性和带电系统。描述介电常数变化的连续函数允许通过量子表面来解析计算对溶剂化自由能的非静电贡献。整个方法在计算上是稳定的,提供一致的能量和力,并且计算工作量和运行时间与标准真空计算相当。能够处理任意分子或平板状几何结构以及带电分子是在混合显式/隐式框架内处理电解质的关键。我们表明,对于给定的固定原子半径,对于一组274种中性溶质,两个参数就足以使相对于实验水合溶剂化能的平均绝对误差仅为1.12 kcal/mol。对于带电系统,同一组参数为一组60种阴离子和52种阳离子提供溶剂化能,误差分别为2.96和2.13 kcal/mol,优于先前文献值。为了处理大多数溶剂化数据库中不存在的元素,针对固液界面提出了一种关于润湿性和接触角的新基准方案,并将其应用于研究电化学介质中CdS(112̅0)表面的稳定终止。