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有机单分子层表面诱导相的结构预测:克服组合瓶颈。

Structure Prediction for Surface-Induced Phases of Organic Monolayers: Overcoming the Combinatorial Bottleneck.

机构信息

Institute of Solid State Physics, NAWI Graz, Graz University of Technology , Petersgasse 16, 8010 Graz, Austria.

Institute for Molecules and Materials, Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.

出版信息

Nano Lett. 2017 Jul 12;17(7):4453-4460. doi: 10.1021/acs.nanolett.7b01637. Epub 2017 Jun 30.

DOI:10.1021/acs.nanolett.7b01637
PMID:28640634
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5512157/
Abstract

Structure determination and prediction pose a major challenge to computational material science, demanding efficient global structure search techniques tailored to identify promising and relevant candidates. A major bottleneck is the fact that due to the many combinatorial possibilities, there are too many possible geometries to be sampled exhaustively. Here, an innovative computational approach to overcome this problem is presented that explores the potential energy landscape of commensurate organic/inorganic interfaces where the orientation and conformation of the molecules in the tightly packed layer is close to a favorable geometry adopted by isolated molecules on the surface. It is specifically designed to sample the energetically lowest lying structures, including the thermodynamic minimum, in order to survey the particularly rich and intricate polymorphism in such systems. The approach combines a systematic discretization of the configuration space, which leads to a huge reduction of the combinatorial possibilities with an efficient exploration of the potential energy surface inspired by the Basin-Hopping method. Interfacing the algorithm with first-principles calculations, the power and efficiency of this approach is demonstrated for the example of the organic molecule TCNE (tetracyanoethylene) on Au(111). For the pristine metal surface, the global minimum structure is found to be at variance with the geometry found by scanning tunneling microscopy. Rather, our results suggest the presence of surface adatoms or vacancies that are not imaged in the experiment.

摘要

结构确定和预测对计算材料科学构成了重大挑战,需要高效的全局结构搜索技术,以有针对性地识别有前途和相关的候选结构。一个主要的瓶颈是,由于组合可能性众多,需要采样的可能结构太多,无法进行穷举。本文提出了一种克服这一问题的创新计算方法,用于探索具有空间匹配的有机/无机界面的势能景观,其中紧密堆积层中分子的取向和构象接近于表面上孤立分子采用的有利几何形状。该方法专门用于采样能量最低的结构,包括热力学最小结构,以调查此类系统中特别丰富和复杂的多晶型现象。该方法结合了配置空间的系统离散化,通过受 Basin-Hopping 方法启发的有效势能表面探索,大大减少了组合可能性。通过将算法与第一性原理计算相结合,我们以有机分子 TCNE(四氰乙烯)在 Au(111)表面上的例子证明了该方法的强大功能和效率。对于原始金属表面,发现全局最小结构与扫描隧道显微镜发现的结构不同。相反,我们的结果表明存在表面吸附原子或空位,实验中无法成像。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/d39b7677ddbc/nl-2017-01637d_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/fe8ef8ccf4f4/nl-2017-01637d_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/2b3ec587b7ea/nl-2017-01637d_0002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/6103078bf6d6/nl-2017-01637d_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/d39b7677ddbc/nl-2017-01637d_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/fe8ef8ccf4f4/nl-2017-01637d_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/2b3ec587b7ea/nl-2017-01637d_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/1cf64413fde8/nl-2017-01637d_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/6103078bf6d6/nl-2017-01637d_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dac/5512157/d39b7677ddbc/nl-2017-01637d_0005.jpg

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