• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

进化晶体结构预测的工作原理——以及原因。

How evolutionary crystal structure prediction works--and why.

机构信息

Department of Geosciences, Stony Brook University, Stony Brook, New York 11794-2100, USA.

出版信息

Acc Chem Res. 2011 Mar 15;44(3):227-37. doi: 10.1021/ar1001318. Epub 2011 Mar 1.

DOI:10.1021/ar1001318
PMID:21361336
Abstract

Once the crystal structure of a chemical substance is known, many properties can be predicted reliably and routinely. Therefore if researchers could predict the crystal structure of a material before it is synthesized, they could significantly accelerate the discovery of new materials. In addition, the ability to predict crystal structures at arbitrary conditions of pressure and temperature is invaluable for the study of matter at extreme conditions, where experiments are difficult. Crystal structure prediction (CSP), the problem of finding the most stable arrangement of atoms given only the chemical composition, has long remained a major unsolved scientific problem. Two problems are entangled here: search, the efficient exploration of the multidimensional energy landscape, and ranking, the correct calculation of relative energies. For organic crystals, which contain a few molecules in the unit cell, search can be quite simple as long as a researcher does not need to include many possible isomers or conformations of the molecules; therefore ranking becomes the main challenge. For inorganic crystals, quantum mechanical methods often provide correct relative energies, making search the most critical problem. Recent developments provide useful practical methods for solving the search problem to a considerable extent. One can use simulated annealing, metadynamics, random sampling, basin hopping, minima hopping, and data mining. Genetic algorithms have been applied to crystals since 1995, but with limited success, which necessitated the development of a very different evolutionary algorithm. This Account reviews CSP using one of the major techniques, the hybrid evolutionary algorithm USPEX (Universal Structure Predictor: Evolutionary Xtallography). Using recent developments in the theory of energy landscapes, we unravel the reasons evolutionary techniques work for CSP and point out their limitations. We demonstrate that the energy landscapes of chemical systems have an overall shape and explore their intrinsic dimensionalities. Because of the inverse relationships between order and energy and between the dimensionality and diversity of an ensemble of crystal structures, the chances that a random search will find the ground state decrease exponentially with increasing system size. A well-designed evolutionary algorithm allows for much greater computational efficiency. We illustrate the power of evolutionary CSP through applications that examine matter at high pressure, where new, unexpected phenomena take place. Evolutionary CSP has allowed researchers to make unexpected discoveries such as a transparent phase of sodium, a partially ionic form of boron, complex superconducting forms of calcium, a novel superhard allotrope of carbon, polymeric modifications of nitrogen, and a new class of compounds, perhydrides. These methods have also led to the discovery of novel hydride superconductors including the "impossible" LiH(n) (n=2, 6, 8) compounds, and CaLi(2). We discuss extensions of the method to molecular crystals, systems of variable composition, and the targeted optimization of specific physical properties.

摘要

一旦一种化学物质的晶体结构被知晓,许多性质就可以被可靠且常规地预测。因此,如果研究人员在材料被合成之前就能预测其晶体结构,他们就可以显著加快新材料的发现。此外,在压力和温度任意条件下预测晶体结构的能力对于在极端条件下研究物质是非常宝贵的,因为在极端条件下实验很难进行。晶体结构预测(CSP)是一个只给定化学组成就找出原子最稳定排列的问题,长期以来一直是一个未解决的重大科学问题。这里有两个问题纠缠在一起:搜索,即对多维能量景观的有效探索,以及排序,即对相对能量的正确计算。对于有机晶体,其晶胞中只包含几个分子,只要研究人员不需要包含分子的许多可能异构体或构象,那么搜索就可以相当简单;因此,排序就成为了主要的挑战。对于无机晶体,量子力学方法通常可以提供正确的相对能量,这使得搜索成为最关键的问题。最近的发展在很大程度上为解决搜索问题提供了有用的实用方法。人们可以使用模拟退火、元动力学、随机采样、盆地跳跃、最小跳跃和数据挖掘。自 1995 年以来,遗传算法已经被应用于晶体,但成功率有限,这就需要开发一种非常不同的进化算法。本综述使用主要技术之一的混合进化算法 USPEX(通用结构预测器:进化晶体学)来综述 CSP。我们利用能量景观理论的最新发展,揭示了进化技术适用于 CSP 的原因,并指出了它们的局限性。我们证明了化学系统的能量景观具有整体形状,并探索了它们的固有维度。由于有序性和能量之间以及晶体结构集合的多样性和维度之间的反比关系,随机搜索找到基态的机会随着系统尺寸的增加呈指数级下降。精心设计的进化算法可以提高计算效率。我们通过研究高压下物质的应用展示了进化 CSP 的强大功能,在高压下会发生新的、意想不到的现象。进化 CSP 使研究人员能够做出意想不到的发现,例如透明的钠相、部分离子形式的硼、钙的复杂超导形式、新型超硬碳同素异形体、氮的聚合修饰以及一类新的化合物,过氢化物。这些方法还导致了新型氢化物超导材料的发现,包括“不可能”的 LiH(n)(n=2、6、8)化合物和 CaLi(2)。我们讨论了该方法在分子晶体、组成可变的系统以及特定物理性质的有针对性优化方面的扩展。

相似文献

1
How evolutionary crystal structure prediction works--and why.进化晶体结构预测的工作原理——以及原因。
Acc Chem Res. 2011 Mar 15;44(3):227-37. doi: 10.1021/ar1001318. Epub 2011 Mar 1.
2
Upflow anaerobic sludge blanket reactor--a review.上流式厌氧污泥床反应器——综述
Indian J Environ Health. 2001 Apr;43(2):1-82.
3
Computed crystal energy landscapes for understanding and predicting organic crystal structures and polymorphism.用于理解和预测有机晶体结构及多晶型性的计算晶体能量景观。
Acc Chem Res. 2009 Jan 20;42(1):117-26. doi: 10.1021/ar800147t.
4
Comparing efficiencies of genetic and minima hopping algorithms for crystal structure prediction.比较遗传算法和最小 hopping 算法在晶体结构预测中的效率。
Phys Chem Chem Phys. 2010 Oct 7;12(37):11617-23. doi: 10.1039/c004096g. Epub 2010 Aug 16.
5
Crystal structure prediction using ab initio evolutionary techniques: principles and applications.使用从头算进化技术的晶体结构预测:原理与应用
J Chem Phys. 2006 Jun 28;124(24):244704. doi: 10.1063/1.2210932.
6
Crystal fingerprint space--a novel paradigm for studying crystal-structure sets.晶体指纹空间——一种研究晶体结构集的新范式。
Acta Crystallogr A. 2010 Sep;66(Pt 5):507-17. doi: 10.1107/S0108767310026395. Epub 2010 Aug 12.
7
Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications.用于分子晶体结构预测的约束进化算法:方法与应用
Acta Crystallogr B. 2012 Jun;68(Pt 3):215-26. doi: 10.1107/S0108768112017466. Epub 2012 May 17.
8
Crystal structure prediction and isostructurality of three small organic halogen compounds.晶体结构预测和三种小分子含卤有机化合物的同晶型性。
Phys Chem Chem Phys. 2010 Aug 14;12(30):8571-9. doi: 10.1039/c003971c. Epub 2010 Jun 8.
9
[Development of antituberculous drugs: current status and future prospects].[抗结核药物的研发:现状与未来前景]
Kekkaku. 2006 Dec;81(12):753-74.
10
From crystal structure prediction to polymorph prediction: interpreting the crystal energy landscape.从晶体结构预测到多晶型预测:解读晶体能量景观。
Phys Chem Chem Phys. 2008 Apr 21;10(15):1996-2009. doi: 10.1039/b719351c. Epub 2008 Feb 19.

引用本文的文献

1
All-temperature barocaloric effects at pressure-induced phase transitions.压力诱导相变时的全温区热释电效应。
Nat Commun. 2025 Aug 19;16(1):7713. doi: 10.1038/s41467-025-63068-z.
2
Fatigue-free ferroelectricity in HfZrO ultrathin films via interfacial design.通过界面设计实现HfZrO超薄薄膜中的无疲劳铁电性
Nat Commun. 2025 Aug 15;16(1):7593. doi: 10.1038/s41467-025-63048-3.
3
Energy filtering-induced ultrahigh thermoelectric power factors in NiGe.能量滤波在NiGe中诱导出超高热电功率因子。
Sci Adv. 2025 Aug;11(31):eadv7113. doi: 10.1126/sciadv.adv7113. Epub 2025 Aug 1.
4
Exploring the Interplay of Lattice Dynamics and Charge Transport in Organic Semiconductors: Progress Toward Rational Phonon Engineering.探索有机半导体中晶格动力学与电荷传输的相互作用:迈向合理声子工程的进展
Angew Chem Int Ed Engl. 2025 Jun 24;64(26):e202507566. doi: 10.1002/anie.202507566. Epub 2025 May 29.
5
Synthesis of BaSiH Hydridosilicate at High Pressures-A Bridge to BaSiH Polyhydride.高压下氢化硅钡的合成——通往多氢化硅钡的桥梁
ACS Omega. 2025 Apr 7;10(15):15029-15035. doi: 10.1021/acsomega.4c10502. eCollection 2025 Apr 22.
6
Machine learning-driven global optimization reveals nanometre-scale mixed phases of borophene on Ag(100).机器学习驱动的全局优化揭示了硼烯在Ag(100)上的纳米级混合相。
Chem Sci. 2025 Mar 14;16(17):7320-7328. doi: 10.1039/d4sc08616c. eCollection 2025 Apr 30.
7
Inverse design of promising electrocatalysts for CO reduction via generative models and bird swarm algorithm.通过生成模型和鸟群算法对用于CO还原的有前景的电催化剂进行逆向设计。
Nat Commun. 2025 Jan 26;16(1):1053. doi: 10.1038/s41467-024-55613-z.
8
End-to-End Crystal Structure Prediction from Powder X-Ray Diffraction.基于粉末X射线衍射的端到端晶体结构预测
Adv Sci (Weinh). 2025 Feb;12(8):e2410722. doi: 10.1002/advs.202410722. Epub 2025 Jan 4.
9
Unusual metallic state in superconducting A15-type LaH.超导A15型氢化镧中的异常金属态
Natl Sci Rev. 2024 Apr 18;11(12):nwae149. doi: 10.1093/nsr/nwae149. eCollection 2024 Dec.
10
Chemical Bonding and Crystal Structure Schemes in Atomic/Molecular Layer Deposited Fe-Terephthalate Thin Films.原子/分子层沉积的对苯二甲酸铁薄膜中的化学键合和晶体结构方案
Chem Mater. 2024 Jun 25;36(13):6489-6503. doi: 10.1021/acs.chemmater.4c00555. eCollection 2024 Jul 9.