Metabolic & Structural Biology Department, CSIR-Central Institute of Medicinal and Aromatic Plants, P.O.-CIMAP, Lucknow, 226015, India.
Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
Sci Rep. 2019 Apr 1;9(1):5414. doi: 10.1038/s41598-019-41984-7.
Flavones are known as an inhibitor of tankyrase, a potential drug target of cancer. We here expedited the use of different computational approaches and presented a fast, easy, cost-effective and high throughput screening method to identify flavones analogs as potential tankyrase inhibitors. For this, we developed a field point based (3D-QSAR) quantitative structure-activity relationship model. The developed model showed acceptable predictive and descriptive capability as represented by standard statistical parameters r (0.89) and q (0.67). This model may help to explain SAR data and illustrated the key descriptors which were firmly related with the anticancer activity. Using the QSAR model a dataset of 8000 flavonoids were evaluated to classify the bioactivity, which resulted in the identification of 1480 compounds with the IC value of less than 5 µM. Further, these compounds were scrutinized through molecular docking and ADMET risk assessment. Total of 25 compounds identified which further analyzed for drug-likeness, oral bioavailability, synthetic accessibility, lead-likeness, and alerts for PAINS & Brenk. Besides, metabolites of screened compounds were also analyzed for pharmacokinetics compliance. Finally, compounds F2, F3, F8, F11, F13, F20, F21 and F25 with predicted activity (IC) of 1.59, 1, 0.62, 0.79, 3.98, 0.79, 0.63 and 0.64, respectively were find as top hit leads. This study is offering the first example of a computationally-driven tool for prioritization and discovery of novel flavone scaffold for tankyrase receptor affinity with high therapeutic windows.
类黄酮是 Tankyrase 的抑制剂,Tankyrase 是癌症的一个潜在药物靶点。我们在这里加快使用不同的计算方法,提出了一种快速、简单、经济高效和高通量的筛选方法,以鉴定类黄酮类似物作为潜在的 Tankyrase 抑制剂。为此,我们开发了一种基于场点的(3D-QSAR)定量构效关系模型。所开发的模型表现出可接受的预测和描述能力,由标准统计参数 r(0.89)和 q(0.67)表示。该模型可以帮助解释 SAR 数据,并说明了与抗癌活性密切相关的关键描述符。使用 QSAR 模型对 8000 种黄酮类化合物进行了评估,以对其生物活性进行分类,结果鉴定出了 1480 种 IC 值小于 5μM 的化合物。进一步通过分子对接和 ADMET 风险评估对这些化合物进行了研究。总共鉴定出 25 种化合物,进一步分析了它们的类药性、口服生物利用度、合成可及性、先导化合物特征和 PAINS 和 Brenk 警报。此外,还分析了筛选化合物的代谢物是否符合药代动力学要求。最后,根据预测活性(IC)为 1.59、1、0.62、0.79、3.98、0.79、0.63 和 0.64 的化合物 F2、F3、F8、F11、F13、F20、F21 和 F25,发现它们是潜在的先导化合物。这项研究提供了第一个计算驱动的工具,用于优先考虑和发现新型类黄酮支架,以获得高治疗窗的 Tankyrase 受体亲和力。