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噻吩和二乙硫醚分子与Ti(OH)(HO)簇相互作用的半经验方法和密度泛函理论方法的基准测试

Benchmarking semiempirical and DFT methods for the interaction of thiophene and diethyl sulfide molecules with a Ti(OH)(HO) cluster.

作者信息

Vorontsov Alexander V, Smirniotis Panagiotis G

机构信息

N.N. Vorozhtsov Novosibirsk Institute of Organic Chemistry, Pr. Ak. Lavrentyeva 9, Novosibirsk, 630090, Russia.

University of Cincinnati, Cincinnati, OH, 45221-0012, USA.

出版信息

J Mol Model. 2017 Aug;23(8):223. doi: 10.1007/s00894-017-3392-y. Epub 2017 Jul 13.

Abstract

Semiempirical methods pm6 and pm7 as well as density functional theory functionals exchange LSDA, exchange-correlation PW91 and PBE, hybrid B3LYP1 and PBE0 were compared for energy and geometry of thiophene, diethyl sulfide (DES) molecules and their binding to a frozen Ti(OH)(HO) complex having one coordinatively unsaturated Ti site representing small fragment of TiO anatase (001) surface. PBE0/6-31G(d) with DFT-D3 dispersion correction was the best method for description of thiophene and DES molecules geometries as comparison with experimental data demonstrated. Semiempirical methods pm6 and pm7 resulted in only three of four possible binding configurations of thiophene with the Ti(OH)(HO) complex while pm7 described correctly the enthalpy and all configurations of DES binding with the Ti(OH)(HO) complex. SBKJC pseudopotential and LSDA with and without dispersion correction produced flawed results for many configurations. PBE0 and PBE with and without dispersion correction and PW91 with 6-31G(d) basis set systematically produced dependable results for thiophene and DES binding to the Ti(OH)(HO) complex. PBE0-D3/6-31G(d), B3LYP1-D3/6-31G(d), and PBE-D3/6-31G(d) gave best match of binding energy for thiophene while PBE0/6-31G(d) gave best match of DES binding energy as comparison with CCSD(T) energy demonstrated. On the basis of the superior results obtained with PBE0/6-31G(d), it is the recommended method for modeling of adsorption over TiO surfaces. Such a conclusion is in agreement with recent literature.

摘要

对噻吩、二乙硫醚(DES)分子及其与具有一个配位不饱和Ti位点的冻结Ti(OH)(HO)络合物的结合情况,比较了半经验方法pm6和pm7以及密度泛函理论泛函交换LSDA、交换关联PW91和PBE、杂化B3LYP1和PBE0的能量和几何结构。该冻结Ti(OH)(HO)络合物具有一个配位不饱和Ti位点,代表TiO锐钛矿(001)表面的小片段。与实验数据比较表明,具有DFT-D3色散校正的PBE0/6-31G(d)是描述噻吩和DES分子几何结构的最佳方法。半经验方法pm6和pm7仅给出了噻吩与Ti(OH)(HO)络合物四种可能结合构型中的三种,而pm7正确描述了DES与Ti(OH)(HO)络合物结合的焓和所有构型。SBKJC赝势以及有无色散校正的LSDA对许多构型产生了有缺陷的结果。有无色散校正的PBE0和PBE以及具有6-31G(d)基组的PW91系统地给出了噻吩和DES与Ti(OH)(HO)络合物结合的可靠结果。与CCSD(T)能量比较表明,PBE0-D3/6-31G(d)、B3LYP1-D3/6-31G(d)和PBE-D3/6-31G(d)给出了噻吩结合能的最佳匹配,而PBE0/6-31G(d)给出了DES结合能的最佳匹配。基于用PBE0/6-31G(d)获得的优异结果,它是用于TiO表面吸附建模的推荐方法。这一结论与最近的文献一致。

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