• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

癌症驱动基因的进化起源及其对癌症预后的影响

Evolutionary Origins of Cancer Driver Genes and Implications for Cancer Prognosis.

作者信息

Chu Xin-Yi, Jiang Ling-Han, Zhou Xiong-Hui, Cui Ze-Jia, Zhang Hong-Yu

机构信息

Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China.

出版信息

Genes (Basel). 2017 Jul 14;8(7):182. doi: 10.3390/genes8070182.

DOI:10.3390/genes8070182
PMID:28708071
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5541315/
Abstract

The cancer atavistic theory suggests that carcinogenesis is a reverse evolution process. It is thus of great interest to explore the evolutionary origins of cancer driver genes and the relevant mechanisms underlying the carcinogenesis. Moreover, the evolutionary features of cancer driver genes could be helpful in selecting cancer biomarkers from high-throughput data. In this study, through analyzing the cancer endogenous molecular networks, we revealed that the subnetwork originating from eukaryota could control the unlimited proliferation of cancer cells, and the subnetwork originating from eumetazoa could recapitulate the other hallmarks of cancer. In addition, investigations based on multiple datasets revealed that cancer driver genes were enriched in genes originating from eukaryota, opisthokonta, and eumetazoa. These results have important implications for enhancing the robustness of cancer prognosis models through selecting the gene signatures by the gene age information.

摘要

癌症返祖理论认为致癌作用是一个逆向进化过程。因此,探索癌症驱动基因的进化起源以及致癌作用背后的相关机制具有极大的研究价值。此外,癌症驱动基因的进化特征有助于从高通量数据中筛选癌症生物标志物。在本研究中,通过分析癌症内源性分子网络,我们发现源自真核生物的子网可以控制癌细胞的无限增殖,而源自真后生动物的子网可以概括癌症的其他特征。此外,基于多个数据集的研究表明,癌症驱动基因在源自真核生物、后鞭毛生物和真后生动物的基因中富集。这些结果对于通过基因年龄信息选择基因特征来增强癌症预后模型的稳健性具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/b1f923ec9864/genes-08-00182-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/526e89e0a637/genes-08-00182-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/60654a314770/genes-08-00182-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/2107926a22b7/genes-08-00182-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/dc62ce787acf/genes-08-00182-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/b1f923ec9864/genes-08-00182-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/526e89e0a637/genes-08-00182-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/60654a314770/genes-08-00182-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/2107926a22b7/genes-08-00182-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/dc62ce787acf/genes-08-00182-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d900/5541315/b1f923ec9864/genes-08-00182-g005.jpg

相似文献

1
Evolutionary Origins of Cancer Driver Genes and Implications for Cancer Prognosis.癌症驱动基因的进化起源及其对癌症预后的影响
Genes (Basel). 2017 Jul 14;8(7):182. doi: 10.3390/genes8070182.
2
Network-Based Analysis of eQTL Data to Prioritize Driver Mutations.基于网络的eQTL数据分析以确定驱动突变的优先级
Genome Biol Evol. 2016 Jan 23;8(3):481-94. doi: 10.1093/gbe/evw010.
3
DriverSubNet: A Novel Algorithm for Identifying Cancer Driver Genes by Subnetwork Enrichment Analysis.驱动子网:一种通过子网富集分析识别癌症驱动基因的新算法。
Front Genet. 2021 Feb 19;11:607798. doi: 10.3389/fgene.2020.607798. eCollection 2020.
4
Identification of hub subnetwork based on topological features of genes in breast cancer.基于乳腺癌基因拓扑特征的枢纽子网鉴定
Int J Mol Med. 2015 Mar;35(3):664-74. doi: 10.3892/ijmm.2014.2057. Epub 2014 Dec 30.
5
Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data.预测基因组学:使用基因组测序数据预测肿瘤临床表型的癌症标志网络框架。
Semin Cancer Biol. 2015 Feb;30:4-12. doi: 10.1016/j.semcancer.2014.04.002. Epub 2014 Apr 18.
6
The evolutionary atavistic endotoxin and neoplastic growth.进化返祖内毒素与肿瘤生长。
Med Hypotheses. 2011 Jan;76(1):128-31. doi: 10.1016/j.mehy.2010.09.001. Epub 2010 Oct 12.
7
Neoplastic growth: the consequence of evolutionary malignant resistance to chronic damage for survival of cells (review of a new theory of the origin of cancer).肿瘤生长:细胞为在慢性损伤中存活而产生的进化性恶性抗性的结果(癌症起源新理论综述)
Med Hypotheses. 2005;65(3):595-604. doi: 10.1016/j.mehy.2005.02.033.
8
The natural immunity to evolutionary atavistic endotoxin for human cancer.人类癌症对进化返祖内毒素的天然免疫力。
Med Hypotheses. 2015 Nov;85(5):701-6. doi: 10.1016/j.mehy.2015.08.011. Epub 2015 Aug 20.
9
Sparse overlapping group lasso for integrative multi-omics analysis.用于综合多组学分析的稀疏重叠组套索法
J Comput Biol. 2015 Feb;22(2):73-84. doi: 10.1089/cmb.2014.0197. Epub 2015 Jan 28.
10
Frequent mutations in acetylation and ubiquitination sites suggest novel driver mechanisms of cancer.乙酰化和泛素化位点的频繁突变提示了癌症新的驱动机制。
Genome Med. 2016 May 12;8(1):55. doi: 10.1186/s13073-016-0311-2.

引用本文的文献

1
Evolutionary screening of precision oncology biomarkers and its applications in prognostic model construction.精准肿瘤学生物标志物的进化筛选及其在预后模型构建中的应用
iScience. 2024 Apr 30;27(6):109859. doi: 10.1016/j.isci.2024.109859. eCollection 2024 Jun 21.
2
GETdb: A comprehensive database for genetic and evolutionary features of drug targets.GETdb:一个关于药物靶点遗传和进化特征的综合数据库。
Comput Struct Biotechnol J. 2024 Apr 3;23:1429-1438. doi: 10.1016/j.csbj.2024.04.006. eCollection 2024 Dec.
3
Evolution-strengthened knowledge graph enables predicting the targetability and druggability of genes.

本文引用的文献

1
Cancer as robust intrinsic state shaped by evolution: a key issues review.癌症作为进化塑造的强健内在状态:关键问题综述。
Rep Prog Phys. 2017 Apr;80(4):042701. doi: 10.1088/1361-6633/aa538e. Epub 2017 Feb 17.
2
Life beyond a diagnosis of glioblastoma: a systematic review of the literature.胶质母细胞瘤诊断后的生存状况:文献系统综述
J Cancer Surviv. 2017 Aug;11(4):447-452. doi: 10.1007/s11764-017-0602-7. Epub 2017 Feb 13.
3
Evolution-informed modeling improves outcome prediction for cancers.基于进化的建模改善癌症的预后预测。
进化增强知识图谱能够预测基因的可靶向性和成药性。
PNAS Nexus. 2023 Apr 26;2(5):pgad147. doi: 10.1093/pnasnexus/pgad147. eCollection 2023 May.
4
Blood Cell DNA Methylation of Aging-Related Ubiquitination Gene Can Predict the Onset of Early Stage Colorectal Cancer.衰老相关泛素化基因的血细胞DNA甲基化可预测早期结直肠癌的发病
Front Oncol. 2020 Nov 27;10:544330. doi: 10.3389/fonc.2020.544330. eCollection 2020.
5
Identifying cancer prognostic modules by module network analysis.通过模块网络分析鉴定癌症预后模块。
BMC Bioinformatics. 2019 Feb 18;20(1):85. doi: 10.1186/s12859-019-2674-z.
6
The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens.癌症基因网络(NCG):从癌症测序筛选中已知和候选癌症基因的综合目录。
Genome Biol. 2019 Jan 3;20(1):1. doi: 10.1186/s13059-018-1612-0.
7
An Introduction to Integrative Genomics and Systems Medicine in Cancer.癌症综合基因组学与系统医学导论
Genes (Basel). 2018 Jan 12;9(1):37. doi: 10.3390/genes9010037.
Evol Appl. 2016 Oct 21;10(1):68-76. doi: 10.1111/eva.12417. eCollection 2017 Jan.
4
Evaluating the evaluation of cancer driver genes.评估癌症驱动基因的评估。
Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14330-14335. doi: 10.1073/pnas.1616440113. Epub 2016 Nov 22.
5
Towards Consensus Gene Ages.迈向基因年龄共识
Genome Biol Evol. 2016 Jun 27;8(6):1812-23. doi: 10.1093/gbe/evw113.
6
From molecular interaction to acute promyelocytic leukemia: Calculating leukemogenesis and remission from endogenous molecular-cellular network.从分子相互作用到急性早幼粒细胞白血病:基于内源性分子-细胞网络计算白血病发生及缓解情况
Sci Rep. 2016 Apr 21;6:24307. doi: 10.1038/srep24307.
7
Evolutionary determinants of cancer.癌症的进化决定因素。
Cancer Discov. 2015 Aug;5(8):806-20. doi: 10.1158/2159-8290.CD-15-0439. Epub 2015 Jul 20.
8
Cancer across the tree of life: cooperation and cheating in multicellularity.生命之树上的癌症:多细胞生物中的合作与欺骗
Philos Trans R Soc Lond B Biol Sci. 2015 Jul 19;370(1673). doi: 10.1098/rstb.2014.0219.
9
Endogenous molecular network reveals two mechanisms of heterogeneity within gastric cancer.内源性分子网络揭示了胃癌异质性的两种机制。
Oncotarget. 2015 May 30;6(15):13607-27. doi: 10.18632/oncotarget.3633.
10
The reverse evolution from multicellularity to unicellularity during carcinogenesis.肿瘤发生过程中从多细胞性到单细胞性的反向进化。
Nat Commun. 2015 Mar 9;6:6367. doi: 10.1038/ncomms7367.