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揭示细胞的生化活性结构

Illuminating the Cell's Biochemical Activity Architecture.

作者信息

Mehta Sohum, Zhang Jin

机构信息

Department of Pharmacology, University of California, San Diego , La Jolla, California 92093, United States.

Department of Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine , Baltimore, Maryland 21205, United States.

出版信息

Biochemistry. 2017 Oct 3;56(39):5210-5213. doi: 10.1021/acs.biochem.7b00561. Epub 2017 Aug 1.

Abstract

All cellular behaviors arise through the coordinated actions of numerous intracellular biochemical pathways. Over the past 20 years, efforts to probe intracellular biochemical processes have undergone a fundamental transformation brought about by advances in fluorescence imaging, such as the development of genetically encoded fluorescent reporters and new imaging technologies; the impact of these approaches on our understanding of the molecular underpinnings of biological function cannot be understated. In particular, the ability to obtain information on the spatiotemporal regulation of biochemical processes unfolding in real time in the native context of a living cell has crystallized the view, long a matter of speculation, that cells achieve specific biological outcomes through the imposition of spatial control over the distribution of various biomolecules, and their associated biochemical activities, within the cellular environment. Indeed, the compartmentalization of biochemical activities by cells is now known to be pervasive and to span a multitude of spatial scales, from the length of a cell to just a few enzymes. In this Perspective, part of this special issue on "Seeing into cells", we highlight several recent imaging studies that provide detailed insights into not just where molecules are but where molecules are active within cells, offering a glimpse into the emerging view of biochemical activity architecture as a complement to the physical architecture of a cell.

摘要

所有细胞行为都是通过众多细胞内生化途径的协同作用产生的。在过去20年里,探测细胞内生化过程的努力经历了一次根本性的转变,这是由荧光成像技术的进步带来的,比如基因编码荧光报告分子的开发和新的成像技术;这些方法对我们理解生物功能的分子基础所产生的影响怎么强调都不为过。特别是,能够在活细胞的天然环境中实时获取有关生化过程时空调节的信息,使长期以来一直是猜测的观点变得明确起来,即细胞通过在细胞环境中对各种生物分子及其相关生化活动的分布施加空间控制来实现特定的生物学结果。事实上,现在已知细胞对生化活动的区室化是普遍存在的,并且跨越了多种空间尺度,从细胞的长度到仅仅几种酶。在这篇“透视”文章中,作为本期关于“洞察细胞”的特刊的一部分,我们重点介绍了几项最近的成像研究,这些研究不仅详细揭示了分子在细胞内的位置,还揭示了分子在细胞内的活性位置,让我们得以一窥新兴的生化活动架构观点,它是细胞物理架构的一种补充。

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本文引用的文献

1
FRET-based Visualization of PDGF Receptor Activation at Membrane Microdomains.
Sci Rep. 2017 May 9;7(1):1593. doi: 10.1038/s41598-017-01789-y.
2
Identification of a multienzyme complex for glucose metabolism in living cells.
J Biol Chem. 2017 Jun 2;292(22):9191-9203. doi: 10.1074/jbc.M117.783050. Epub 2017 Apr 19.
3
The mystery of membrane organization: composition, regulation and roles of lipid rafts.
Nat Rev Mol Cell Biol. 2017 Jun;18(6):361-374. doi: 10.1038/nrm.2017.16. Epub 2017 Mar 30.
4
Genetically encoded biosensors for visualizing live-cell biochemical activity at super-resolution.
Nat Methods. 2017 Apr;14(4):427-434. doi: 10.1038/nmeth.4221. Epub 2017 Mar 13.
5
Biomolecular condensates: organizers of cellular biochemistry.
Nat Rev Mol Cell Biol. 2017 May;18(5):285-298. doi: 10.1038/nrm.2017.7. Epub 2017 Feb 22.
6
AKAP-mediated feedback control of cAMP gradients in developing hippocampal neurons.
Nat Chem Biol. 2017 Apr;13(4):425-431. doi: 10.1038/nchembio.2298. Epub 2017 Feb 13.
8
Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets.
Cell. 2017 Jan 12;168(1-2):159-171.e14. doi: 10.1016/j.cell.2016.11.054. Epub 2016 Dec 29.
9
β-adrenergic receptor control of endosomal PTH receptor signaling via Gβγ.
Nat Chem Biol. 2017 Mar;13(3):259-261. doi: 10.1038/nchembio.2267. Epub 2016 Dec 26.
10
Spatiotemporal imaging of small GTPases activity in live cells.
Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14348-14353. doi: 10.1073/pnas.1613999113. Epub 2016 Nov 29.

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