Bhupat and Jyoti Mehta School of Biosciences and Department of Biotechnology, Indian Institute of Technology Madras, Chennai, 600036, India.
Sci Rep. 2017 Jul 21;7(1):6159. doi: 10.1038/s41598-017-05449-z.
CETP transfers cholesteryl esters (CEs) and triglycerides (TGs) between different lipoproteins and came in limelight as a drug-target against CVD. In the search for detailed mechanism of lipid transfer through CETP, enormous effort is devoted employing crystallographic, cryo-EM, and Molecular Dynamics (MD) studies. However, these studies primarily focused on CE-bound CETP structure and CE transfer mechanism. With the reported correlation that CETP looses significant CE transfer activity upon inhibiting TG transfer, it is of tremendous importance to understand the structure and dynamics of TG-bound CETP. Our results from large-scale all-atom and coarse-grained MD simulations show that CETP can accommodate two TG molecules in parallel N-N orientation with TG oleate chains majorly attaining the tuning-fork conformation. In TG-bound form, CETP not only maintained its secondary structures but also exhibited similar bending-twisting motions as reported for CE-CETP crystal structure. Obtained structural information are further validated by correlating to available functional data of 2-8 fold slower transfer rate of TG through CETP, where we show that TGs make 20% additional contacts with CETP compared to CEs. Identified CETP residues facilitating TG binding also match very well with reported mutagenesis data. The study could accelerate the drug-designing processes to combat CETP functionality and CVD.
CETP 在不同脂蛋白之间转移胆固醇酯 (CEs) 和甘油三酯 (TGs),作为一种针对 CVD 的药物靶点备受关注。在寻找通过 CETP 进行脂质转移的详细机制的过程中,人们投入了大量的精力进行晶体学、冷冻电镜和分子动力学 (MD) 研究。然而,这些研究主要集中在结合 CE 的 CETP 结构和 CE 转移机制上。由于报道称 CETP 在抑制 TG 转移时会失去显著的 CE 转移活性,因此了解结合 TG 的 CETP 的结构和动力学至关重要。我们通过大规模全原子和粗粒 MD 模拟得到的结果表明,CETP 可以在平行的 N-N 方向上容纳两个 TG 分子,其中 TG 油酸盐链主要呈调谐叉构象。在 TG 结合形式下,CETP 不仅保持其二级结构,而且还表现出与 CE-CETP 晶体结构报告相似的弯曲扭曲运动。获得的结构信息通过与 CETP 通过 2-8 倍较慢的 TG 转移率的可用功能数据相关联进一步得到验证,我们表明与 CEs 相比,TGs 与 CETP 形成 20%的额外接触。确定的促进 TG 结合的 CETP 残基也与报道的诱变数据非常吻合。这项研究可以加速药物设计过程,以对抗 CETP 的功能和 CVD。