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估算蜻蜓目cox1序列全球数据集中的条形码间隙:接近,但未成功。

Estimating the barcoding gap in a global dataset of cox1 sequences for Odonata: close, but no cigar.

作者信息

Koroiva Ricardo, Kvist Sebastian

机构信息

a Ecology and Conservation Graduate Program , Universidade Federal de Mato Grosso do Sul , Campo Grande , Mato Grosso do Sul , Brazil.

b Laboratório de Ecologia, Universidade Federal de Mato Grosso do Sul, Cidade Universitária s/n , Campo Grande , Mato Grosso do Sul , Brazil.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2018 Jul;29(5):765-771. doi: 10.1080/24701394.2017.1357709. Epub 2017 Jul 28.

Abstract

We evaluated the extent of intraspecific and interspecific genetic distances for two highly diverse infraorders of Odonata: Anisoptera and Zygoptera. All cytochrome c oxidase subunit I sequences (cox1), the region chosen for zoological DNA barcoding, present in GenBank for each infraorder were downloaded and curated. For Anisoptera, the final dataset consisted of 2,961 individual cox1 sequences for 536 species and the equivalent numbers for Zygoptera were 2,477 sequences for 497 species. More than 7 million individual genetic comparisons were made and the results indicated that there is a tendency towards a barcoding gap, but that the size of the gap may not be sufficient to robustly infer identities for some taxa. DNA barcoding may be of less use for some odonate taxa, perhaps pertaining to misidentifications in global databases. However, at local scales or with more confined taxonomical sampling, this tool may yet be beneficial in identifying these charismatic organisms.

摘要

我们评估了蜻蜓目两个高度多样化的亚目

差翅亚目和束翅亚目的种内和种间遗传距离。从GenBank下载并整理了每个亚目中所有细胞色素c氧化酶亚基I序列(cox1),该区域是用于动物DNA条形码识别的选定区域。对于差翅亚目,最终数据集由536个物种的2961条个体cox1序列组成,束翅亚目的相应数量为497个物种的2477条序列。我们进行了超过700万次个体遗传比较,结果表明存在条形码间隙的趋势,但间隙大小可能不足以可靠地推断某些分类单元的身份。DNA条形码识别对某些蜻蜓目分类单元可能用处较小,这可能与全球数据库中的错误识别有关。然而,在局部尺度或进行更有限的分类采样时,该工具可能仍有助于识别这些具有魅力的生物。

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