Hahn Martin W, Schmidt Johanna, Koll Ulrike, Rohde Manfred, Verbarg Susanne, Pitt Alexandra, Nakai Ryosuke, Naganuma Takeshi, Lang Elke
Research Institute for Limnology, University of Innsbruck, Mondseestrasse 9, 5310 Mondsee, Austria.
Central Facility for Microscopy, Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany.
Int J Syst Evol Microbiol. 2017 Aug;67(8):2555-2568. doi: 10.1099/ijsem.0.001965. Epub 2017 Aug 4.
The unusual chemo-organoheterotrophic proteobacterial strain MWH-Nonnen-W8redT was isolated from a lake located in the Black Forest (Schwarzwald), Germany, by using the filtration-acclimatization method. Phylogenetic analyses based on the 16S rRNA gene sequence of the strain could not provide clear hints on classification of the strain in one of the current classes of the phylum Proteobacteria. Whole-genome sequencing resulted in a genome size of 3.5 Mbp and revealed a quite low DNA G+C content of 32.6 mol%. In-depth phylogenetic analyses based on alignments of 74 protein sequences of a phylogenetically broad range of taxa suggested assignment of the strain to a new order of the class Oligoflexia. These analyses also suggested that the order Bdellovibrionales should be transferred from the class Deltaproteobacteria to the class Oligoflexia, that this order should be split into two orders, and that the family Pseudobacteriovoracaceae should be transferred from the order Bdellovibrionales to the order Oligoflexales. We propose to establish for strain MWH-Nonnen-W8redT (=DSM 23856T=CCUG 58639T) the novel species and genus Silvanigrella aquatica gen. nov., sp. nov. to be placed in the new family Silvanigrellaceae fam. nov. of the new order Silvanigrellales ord. nov.
通过过滤驯化法,从德国黑森林地区的一个湖泊中分离出了一株不同寻常的化学有机异养型变形杆菌菌株MWH-Nonnen-W8redT。基于该菌株16S rRNA基因序列的系统发育分析,无法为该菌株在变形菌门当前分类中的归属提供明确线索。全基因组测序结果显示,该菌株基因组大小为3.5 Mbp,DNA G+C含量相当低,为32.6 mol%。基于广泛分类群的74个蛋白质序列比对进行的深入系统发育分析表明,该菌株应归入寡养弯曲菌纲的一个新目。这些分析还表明,蛭弧菌目应从δ-变形菌纲转移至寡养弯曲菌纲,该目应分为两个目,假食菌蛭弧菌科应从蛭弧菌目转移至寡养弯曲菌目。我们建议为菌株MWH-Nonnen-W8redT(=DSM 23856T=CCUG 58639T)建立新属新种水生林黑菌Silvanigrella aquatica gen. nov., sp. nov.,归入新目林黑菌目Silvanigrellales ord. nov.的新科林黑菌科Silvanigrellaceae fam. nov.。