从淡水湿地分离出的新型菌株DR1的基因组序列草图
Draft Genome Sequence of DR1, a Novel Strain Isolated from a Freshwater Wetland.
作者信息
Chauhan Deepika, Srivastava Pulkit Anupam, Yennamalli Ragothaman M, Priyadarshini Richa
机构信息
Department of Life Sciences, School of Natural Sciences, Shiv Nadar University, Gautam Buddha Nagar, Uttar Pradesh, India.
Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Himachal Pradesh, India.
出版信息
Genome Announc. 2017 Aug 3;5(31):e00754-17. doi: 10.1128/genomeA.00754-17.
Abstract
strain DR1, a red-pigmented, arsenic- and radiation-resistant bacterium, was isolated from a water sample of the Dadri wetland, Uttar Pradesh, India. Here, we report a draft genome sequence of this strain, which may provide useful information regarding the genes and pathways involved in heavy-metal bioremediation.
摘要
菌株DR1是一种红色色素沉着、抗砷和抗辐射的细菌，从印度北方邦达德里湿地的水样中分离得到。在此，我们报告该菌株的基因组草图序列，这可能为参与重金属生物修复的基因和途径提供有用信息。
相似文献
1
Draft Genome Sequence of DR1, a Novel Strain Isolated from a Freshwater Wetland.从淡水湿地分离出的新型菌株DR1的基因组序列草图
Genome Announc. 2017 Aug 3;5(31):e00754-17. doi: 10.1128/genomeA.00754-17.
2
Structural and functional mapping of gene cluster in DR1.DR1中基因簇的结构与功能图谱
Comput Struct Biotechnol J. 2022 Dec 11;21:519-534. doi: 10.1016/j.csbj.2022.12.015. eCollection 2023.
3
Deinococcus indicus sp. nov., an arsenic-resistant bacterium from an aquifer in West Bengal, India.印度嗜放射菌新种，一种来自印度西孟加拉邦含水层的抗砷细菌。
Int J Syst Evol Microbiol. 2004 Mar;54(Pt 2):457-461. doi: 10.1099/ijs.0.02758-0.
4
Amino Acid-Dependent Alterations in Cell Wall and Cell Morphology of DR1.DR1细胞壁和细胞形态中氨基酸依赖性改变
Front Microbiol. 2019 Jul 3;10:1449. doi: 10.3389/fmicb.2019.01449. eCollection 2019.
5
Molecular characterization of stress tolerance genes associated with D. indicus strain under extreme environment conditions.鉴定与极端环境条件下 D. indicus 菌株相关的应激耐受基因的分子特征。
Environ Geochem Health. 2021 Dec;43(12):4905-4917. doi: 10.1007/s10653-020-00788-9. Epub 2021 Jan 23.
6
Draft Genome Sequence of sp. Strain S9, Isolated from Microbial Mat Deposits of Hot Springs Located atop the Himalayan Ranges at Manikaran, India.从印度马尼卡兰喜马拉雅山脉顶部温泉的微生物垫沉积物中分离出的sp.菌株S9的基因组序列草图
Microbiol Resour Announc. 2019 Jul 11;8(28):e00316-19. doi: 10.1128/MRA.00316-19.
7
Structure and function prediction of arsenate reductase from Deinococcus indicus DR1.印度德氏菌 DR1 中砷酸盐还原酶的结构与功能预测。
J Mol Model. 2019 Jan 4;25(1):15. doi: 10.1007/s00894-018-3885-3.
8
Unraveling the multifaceted resilience of arsenic resistant bacterium .解析抗砷细菌的多方面抗性
Front Microbiol. 2023 Aug 24;14:1240798. doi: 10.3389/fmicb.2023.1240798. eCollection 2023.
9
Cytosolic expression of synthetic phytochelatin and bacterial metallothionein genes in Deinococcus radiodurans R1 for enhanced tolerance and bioaccumulation of cadmium.在耐辐射球菌R1中合成植物螯合肽和细菌金属硫蛋白基因的胞质表达以增强对镉的耐受性和生物累积性。
Biometals. 2014 Jun;27(3):471-82. doi: 10.1007/s10534-014-9721-z. Epub 2014 Mar 1.
10
Draft Genome Sequence of Deinococcus koreensis SJW1-2, a Gamma Radiation-Resistant Bacterium Isolated from River Water.从河水中分离出的抗γ辐射细菌韩国嗜皮菌SJW1-2的基因组序列草图
Microbiol Resour Announc. 2018 Aug 16;7(6). doi: 10.1128/MRA.00894-18. eCollection 2018 Aug.
引用本文的文献
1
Structure predictions and functional insights into Amidase_3 domain containing N-acetylmuramyl-L-alanine amidases from Deinococcus indicus DR1.结构预测和功能研究揭示了印度德氏菌 DR1 中酰胺酶_3 结构域含有的 N-乙酰胞壁酰-L-丙氨酸酰胺酶。
BMC Microbiol. 2024 Mar 26;24(1):101. doi: 10.1186/s12866-024-03225-4.
2
Unraveling the multifaceted resilience of arsenic resistant bacterium .解析抗砷细菌的多方面抗性
Front Microbiol. 2023 Aug 24;14:1240798. doi: 10.3389/fmicb.2023.1240798. eCollection 2023.
3
Structural and functional mapping of gene cluster in DR1.DR1中基因簇的结构与功能图谱
Comput Struct Biotechnol J. 2022 Dec 11;21:519-534. doi: 10.1016/j.csbj.2022.12.015. eCollection 2023.
4
The diversity and commonalities of the radiation-resistance mechanisms of Deinococcus and its up-to-date applications.嗜放射菌抗辐射机制的多样性与共性及其最新应用
AMB Express. 2019 Sep 3;9(1):138. doi: 10.1186/s13568-019-0862-x.
5
Amino Acid-Dependent Alterations in Cell Wall and Cell Morphology of DR1.DR1细胞壁和细胞形态中氨基酸依赖性改变
Front Microbiol. 2019 Jul 3;10:1449. doi: 10.3389/fmicb.2019.01449. eCollection 2019.
6
Structure and function prediction of arsenate reductase from Deinococcus indicus DR1.印度德氏菌 DR1 中砷酸盐还原酶的结构与功能预测。
J Mol Model. 2019 Jan 4;25(1):15. doi: 10.1007/s00894-018-3885-3.
本文引用的文献
1
CISA: contig integrator for sequence assembly of bacterial genomes.CISA：用于细菌基因组序列组装的 contig 整合器。
PLoS One. 2013;8(3):e60843. doi: 10.1371/journal.pone.0060843. Epub 2013 Mar 28.
2
FastUniq: a fast de novo duplicates removal tool for paired short reads.FastUniq：一种用于配对短读长的快速从头去重工具。
PLoS One. 2012;7(12):e52249. doi: 10.1371/journal.pone.0052249. Epub 2012 Dec 20.
3
Characterization and genomic analysis of chromate resistant and reducing Bacillus cereus strain SJ1.铬酸盐抗性和还原芽孢杆菌 SJ1 的特性及基因组分析。
BMC Microbiol. 2010 Aug 19;10:221. doi: 10.1186/1471-2180-10-221.
4
Deinococcus depolymerans sp. nov., a gamma- and UV-radiation-resistant bacterium, isolated from a naturally radioactive site.聚多球菌新种，一种来自天然放射性场所的γ射线和紫外线辐射抗性细菌。
Int J Syst Evol Microbiol. 2011 Jun;61(Pt 6):1448-1453. doi: 10.1099/ijs.0.013482-0. Epub 2010 Jul 9.
5
Deinococcus radiodurans - the consummate survivor.耐辐射球菌——完美的幸存者。
Nat Rev Microbiol. 2005 Nov;3(11):882-92. doi: 10.1038/nrmicro1264.
6
Deinococcus indicus sp. nov., an arsenic-resistant bacterium from an aquifer in West Bengal, India.印度嗜放射菌新种，一种来自印度西孟加拉邦含水层的抗砷细菌。
Int J Syst Evol Microbiol. 2004 Mar;54(Pt 2):457-461. doi: 10.1099/ijs.0.02758-0.
7
Operon mer: bacterial resistance to mercury and potential for bioremediation of contaminated environments.mer操纵子：细菌对汞的抗性及对污染环境的生物修复潜力。
Genet Mol Res. 2003 Mar 31;2(1):92-101.
8
Copper uptake and resistance in bacteria.细菌中的铜摄取与抗性
Mol Microbiol. 1993 Jan;7(1):1-5. doi: 10.1111/j.1365-2958.1993.tb01091.x.
9
Novel ionizing radiation-sensitive mutants of Deinococcus radiodurans.耐辐射球菌的新型电离辐射敏感突变体。
J Bacteriol. 1994 Dec;176(24):7439-46. doi: 10.1128/jb.176.24.7439-7446.1994.
10
Reduction of arsenate to arsenite by the ArsC protein of the arsenic resistance operon of Staphylococcus aureus plasmid pI258.金黄色葡萄球菌质粒pI258砷抗性操纵子的ArsC蛋白将砷酸盐还原为亚砷酸盐。
Proc Natl Acad Sci U S A. 1992 Oct 15;89(20):9474-8. doi: 10.1073/pnas.89.20.9474.
Zotero 插件