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下调的miR-133a-3p表达在膀胱癌中的作用:一项生物信息学研究

Role of downregulated miR-133a-3p expression in bladder cancer: a bioinformatics study.

作者信息

Gao Li, Li Sheng-Hua, Tian Yi-Xin, Zhu Qing-Qing, Chen Gang, Pang Yu-Yan, Hu Xiao-Hua

机构信息

Department of Medical Oncology.

Department of Urology Surgery.

出版信息

Onco Targets Ther. 2017 Jul 20;10:3667-3683. doi: 10.2147/OTT.S137433. eCollection 2017.

Abstract

It has been discovered that miR-133a-3p acts as a tumor suppressor in bladder cancer (BC). Nevertheless, the function of miR-133a-3p in BC remains unclarified. Thus, we carried out this study to validate the expression of miR-133a-3p in BC and provide insights into the molecular mechanism underlying it. To assess the expression of miR-133a-3p in BC, we searched eligible studies from literature and Gene expression Omnibus (GEO) to perform a meta-analysis. We also plotted the summary receiver operating characteristic (SROC) curve to evaluate the diagnostic ability of miR-133a-3p in BC. Additionally, the potential target genes of miR-133a-3p were acquired from 14 online software programs and GEO database. Protein-protein interaction (PPI) network was created to identify the hub genes. Then, Gene Ontology (GO) functional annotation analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were carried out to investigate the regulatory network of the target genes. From the meta-analysis, miR-133a-3p was remarkably downregulated in BC tissues compared with that in non-cancer tissues (standard mean difference =-3.84, 95% confidence interval =-6.99-0.29). Moreover, results from SROC suggested that miR-133a-3p exhibited the ability to diagnose BC (area under curve =0.8418). As for the bioinformatics study, 488 genes were chosen as the potential targets of miR-133a-3p in BC, among which 10 genes were defined as hub genes (all degrees >5). Further GO and KEGG pathway analysis indicated that the target genes of miR-133a-3p aggregated in specific biological process and pathways. In conclusion, miR-133a-3p possessed great diagnostic potential with its downregulation in BC, and miR-133a-3p might serve as a novel biomarker for BC.

摘要

现已发现,miR-133a-3p在膀胱癌(BC)中发挥肿瘤抑制作用。然而,miR-133a-3p在BC中的功能仍不明确。因此,我们开展了本研究以验证miR-133a-3p在BC中的表达,并深入了解其潜在的分子机制。为评估miR-133a-3p在BC中的表达,我们从文献和基因表达综合数据库(GEO)中检索符合条件的研究以进行荟萃分析。我们还绘制了总结性受试者工作特征(SROC)曲线,以评估miR-133a-3p对BC的诊断能力。此外,通过14个在线软件程序和GEO数据库获得了miR-133a-3p的潜在靶基因。构建了蛋白质-蛋白质相互作用(PPI)网络以识别枢纽基因。然后,进行基因本体(GO)功能注释分析和京都基因与基因组百科全书(KEGG)通路分析,以研究靶基因的调控网络。荟萃分析结果显示,与非癌组织相比,BC组织中miR-133a-3p显著下调(标准平均差异=-3.84,95%置信区间=-6.99 - 0.29)。此外,SROC结果表明,miR-133a-3p具有诊断BC的能力(曲线下面积=0.8418)。关于生物信息学研究,488个基因被选为BC中miR-133a-3p的潜在靶标,其中10个基因被定义为枢纽基因(所有度数>5)。进一步的GO和KEGG通路分析表明,miR-133a-3p的靶基因聚集在特定的生物学过程和通路中。总之,miR-133a-3p在BC中表达下调,具有巨大的诊断潜力,且可能作为BC的一种新型生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ac9/5530854/ed298eb4b38f/ott-10-3667Fig1.jpg

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