Department of Genetics, Harvard Medical School, Boston, MA 02115.
Federal University of Sao Joao del Rei, Divinopolis, Minas Gerais 36301, Brazil.
Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):9409-9414. doi: 10.1073/pnas.1707635114. Epub 2017 Aug 14.
While several large-scale resources are available for in vivo loss-of-function studies in , an analogous resource for overexpressing genes from their endogenous loci does not exist. We describe a strategy for generating such a resource using Cas9 transcriptional activators (CRISPRa). First, we compare a panel of CRISPRa approaches and demonstrate that, for in vivo studies, dCas9-VPR is the most optimal activator. Next, we demonstrate that this approach is scalable and has a high success rate, as >75% of the lines tested activate their target gene. We show that CRISPRa leads to physiologically relevant levels of target gene expression capable of generating strong gain-of-function (GOF) phenotypes in multiple tissues and thus serves as a useful platform for genetic screening. Based on the success of this CRISRPa approach, we are generating a genome-wide collection of flies expressing single-guide RNAs (sgRNAs) for CRISPRa. We also present a collection of more than 30 Gal4 > UAS:dCas9-VPR lines to aid in using these sgRNA lines for GOF studies in vivo.
尽管有几个大型资源可用于体内功能丧失研究,但不存在用于从内源性基因座过表达基因的类似资源。我们描述了一种使用 Cas9 转录激活剂(CRISPRa)生成此类资源的策略。首先,我们比较了一组 CRISPRa 方法,并证明对于体内研究,dCas9-VPR 是最理想的激活剂。接下来,我们证明该方法具有可扩展性和高成功率,因为 >75%的测试品系激活了其靶基因。我们表明 CRISPRa 导致靶基因表达的生理相关水平,能够在多种组织中产生强烈的功能获得(GOF)表型,因此是遗传筛选的有用平台。基于这种 CRISPRa 方法的成功,我们正在生成一个表达 CRISPRa 单引导 RNA(sgRNA)的全基因组果蝇集合。我们还提供了超过 30 个 Gal4 > UAS:dCas9-VPR 品系的集合,以帮助在体内进行 GOF 研究中使用这些 sgRNA 品系。